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- PDB-8azg: Crystal structure of MreB from Geobacillus stearothermophilus ATC... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8azg | ||||||
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Title | Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953 in complex with ATP | ||||||
![]() | Cell shape-determining protein MreB | ||||||
![]() | STRUCTURAL PROTEIN / bacterial actin / bacterial cytoskeleton | ||||||
Function / homology | ![]() cell morphogenesis / regulation of cell shape / GTP binding / ATP binding / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Li de la Sierra-Gallay, I. / Mao, W. | ||||||
Funding support | ![]()
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![]() | ![]() Title: On the role of nucleotides and lipids in the polymerization of the actin homolog MreB from a Gram-positive bacterium. Authors: Mao, W. / Renner, L.D. / Cornilleau, C. / Li de la Sierra-Gallay, I. / Afensiss, S. / Benlamara, S. / Ah-Seng, Y. / Van Tilbeurgh, H. / Nessler, S. / Bertin, A. / Chastanet, A. / Carballido-Lopez, R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 96.5 KB | Display | ![]() |
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PDB format | ![]() | 56.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 754 KB | Display | ![]() |
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Full document | ![]() | 755.7 KB | Display | |
Data in XML | ![]() | 14.5 KB | Display | |
Data in CIF | ![]() | 19.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7zptSC ![]() 7zpuC S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 37405.078 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: mreB, B4109_2230, B4114_2117, GS458_2390 / Production host: ![]() ![]() | ||||
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#2: Chemical | ChemComp-ATP / | ||||
#3: Chemical | #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.94 Å3/Da / Density % sol: 58.15 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: PEG 8000, glycerol, potassium phosphate, magnesium chloride |
-Data collection
Diffraction | Mean temperature: 95 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 16M / Detector: PIXEL / Date: Nov 9, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.978565 Å / Relative weight: 1 |
Reflection | Resolution: 2.29→43.88 Å / Num. obs: 19996 / % possible obs: 99.7 % / Redundancy: 13.13 % / Biso Wilson estimate: 48.1 Å2 / CC1/2: 1 / Rrim(I) all: 0.146 / Net I/σ(I): 12.41 |
Reflection shell | Resolution: 2.29→2.43 Å / Num. unique obs: 3130 / CC1/2: 0.84 / Rrim(I) all: 1.41 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 7ZPT Resolution: 2.29→42.47 Å / SU ML: 0.2779 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 28.9527 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 58.48 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.29→42.47 Å
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Refine LS restraints |
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LS refinement shell |
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