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- PDB-8ail: Bacillus phage VMY22 p56 in complex with Bacillus weidmannii Ung -

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Basic information

Entry
Database: PDB / ID: 8ail
TitleBacillus phage VMY22 p56 in complex with Bacillus weidmannii Ung
Components
  • Bacillus phage VMY22 p56
  • Uracil-DNA glycosylase
KeywordsPROTEIN BINDING / Inhibitor / Complex / UDG / Ung
Function / homology
Function and homology information


uracil-DNA glycosylase / uracil DNA N-glycosylase activity / base-excision repair / cytoplasm
Similarity search - Function
Uracil-DNA glycosylase family 1 / UreE urease accessory protein, C-terminal domain / Uracil DNA glycosylase superfamily / Uracil-DNA glycosylase, active site / Uracil-DNA glycosylase signature. / Uracil-DNA glycosylase-like / Uracil DNA glycosylase superfamily / Uracil-DNA glycosylase-like domain superfamily
Similarity search - Domain/homology
IODIDE ION / Uncharacterized protein / Uracil-DNA glycosylase
Similarity search - Component
Biological speciesBacillus wiedmannii (bacteria)
Bacillus phage VMY22 (virus)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.45 Å
AuthorsMuselmani, W. / Bagneris, C. / Savva, R.
Funding support United Kingdom, 1items
OrganizationGrant numberCountry
Birkbeck College United Kingdom
CitationJournal: Viruses / Year: 2023
Title: A Multimodal Approach towards Genomic Identification of Protein Inhibitors of Uracil-DNA Glycosylase.
Authors: Muselmani, W. / Kashif-Khan, N. / Bagneris, C. / Santangelo, R. / Williams, M.A. / Savva, R.
History
DepositionJul 26, 2022Deposition site: PDBE / Processing site: PDBE
Revision 1.0Jun 21, 2023Provider: repository / Type: Initial release
Revision 1.1Jul 12, 2023Group: Database references / Category: citation / Item: _citation.pdbx_database_id_PubMed / _citation.title
Revision 1.2Feb 7, 2024Group: Data collection / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id ..._struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
I: Uracil-DNA glycosylase
M: Uracil-DNA glycosylase
A: Uracil-DNA glycosylase
B: Uracil-DNA glycosylase
O: Bacillus phage VMY22 p56
E: Bacillus phage VMY22 p56
F: Bacillus phage VMY22 p56
J: Bacillus phage VMY22 p56
N: Bacillus phage VMY22 p56
C: Bacillus phage VMY22 p56
K: Bacillus phage VMY22 p56
D: Bacillus phage VMY22 p56
hetero molecules


Theoretical massNumber of molelcules
Total (without water)159,20824
Polymers157,96412
Non-polymers1,24412
Water2,324129
1
I: Uracil-DNA glycosylase
M: Uracil-DNA glycosylase
O: Bacillus phage VMY22 p56
J: Bacillus phage VMY22 p56
N: Bacillus phage VMY22 p56
K: Bacillus phage VMY22 p56
hetero molecules


Theoretical massNumber of molelcules
Total (without water)79,60412
Polymers78,9826
Non-polymers6226
Water905
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area11920 Å2
ΔGint-61 kcal/mol
Surface area27990 Å2
MethodPISA
2
A: Uracil-DNA glycosylase
B: Uracil-DNA glycosylase
E: Bacillus phage VMY22 p56
F: Bacillus phage VMY22 p56
C: Bacillus phage VMY22 p56
D: Bacillus phage VMY22 p56
hetero molecules


Theoretical massNumber of molelcules
Total (without water)79,60412
Polymers78,9826
Non-polymers6226
Water1086
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area11910 Å2
ΔGint-64 kcal/mol
Surface area27850 Å2
MethodPISA
Unit cell
Length a, b, c (Å)85.327, 97.495, 100.555
Angle α, β, γ (deg.)90.000, 111.362, 90.000
Int Tables number4
Space group name H-MP1211
Noncrystallographic symmetry (NCS)NCS domain:
IDEns-IDDetails
11I
21M
32I
42A
53I
63B
74M
84A
95M
105B
116A
126B
137O
147E
158O
168F
179O
189J
1910O
2010N
2111O
2211C
2312O
2412K
2513O
2613D
2714E
2814F
2915E
3015J
3116E
3216N
3317E
3417C
3518E
3618K
3719E
3819D
3920F
4020J
4121F
4221N
4322F
4422C
4523F
4623K
4724F
4824D
4925J
5025N
5126J
5226C
5327J
5427K
5528J
5628D
5729N
5829C
5930N
6030K
6131N
6231D
6332C
6432K
6533C
6633D
6734K
6834D

NCS domain segments:
Dom-IDComponent-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
111ASNASNASNASNIA3 - 2243 - 224
221ASNASNASNASNMB3 - 2243 - 224
332METMETLEULEUIA1 - 2251 - 225
442METMETLEULEUAC1 - 2251 - 225
553METMETLEULEUIA1 - 2251 - 225
663METMETLEULEUBD1 - 2251 - 225
774ASNASNASNASNMB3 - 2243 - 224
884ASNASNASNASNAC3 - 2243 - 224
995ASNASNASNASNMB3 - 2243 - 224
10105ASNASNASNASNBD3 - 2243 - 224
11116METMETLEULEUAC1 - 2251 - 225
12126METMETLEULEUBD1 - 2251 - 225
13137METMETPHEPHEOE1 - 561 - 56
14147METMETPHEPHEEF1 - 561 - 56
15158PHEPHEMETMETOE4 - 554 - 55
16168PHEPHEMETMETFG4 - 554 - 55
17179PHEPHEMETMETOE4 - 554 - 55
18189PHEPHEMETMETJH4 - 554 - 55
191910PHEPHEMETMETOE4 - 554 - 55
202010PHEPHEMETMETNI4 - 554 - 55
212111ASPASPMETMETOE6 - 556 - 55
222211ASPASPMETMETCJ6 - 556 - 55
232312ASPASPMETMETOE6 - 556 - 55
242412ASPASPMETMETKK6 - 556 - 55
252513ASPASPMETMETOE6 - 556 - 55
262613ASPASPMETMETDL6 - 556 - 55
272714PHEPHEMETMETEF4 - 554 - 55
282814PHEPHEMETMETFG4 - 554 - 55
292915PHEPHEMETMETEF4 - 554 - 55
303015PHEPHEMETMETJH4 - 554 - 55
313116PHEPHEMETMETEF4 - 554 - 55
323216PHEPHEMETMETNI4 - 554 - 55
333317ASPASPMETMETEF6 - 556 - 55
343417ASPASPMETMETCJ6 - 556 - 55
353518ASPASPMETMETEF6 - 556 - 55
363618ASPASPMETMETKK6 - 556 - 55
373719ASPASPMETMETEF6 - 556 - 55
383819ASPASPMETMETDL6 - 556 - 55
393920PHEPHEPHEPHEFG4 - 564 - 56
404020PHEPHEPHEPHEJH4 - 564 - 56
414121PHEPHEPHEPHEFG4 - 564 - 56
424221PHEPHEPHEPHENI4 - 564 - 56
434322ASPASPMETMETFG6 - 556 - 55
444422ASPASPMETMETCJ6 - 556 - 55
454523ASPASPMETMETFG6 - 556 - 55
464623ASPASPMETMETKK6 - 556 - 55
474724ASPASPMETMETFG6 - 556 - 55
484824ASPASPMETMETDL6 - 556 - 55
494925PHEPHEPHEPHEJH4 - 564 - 56
505025PHEPHEPHEPHENI4 - 564 - 56
515126ASPASPMETMETJH6 - 556 - 55
525226ASPASPMETMETCJ6 - 556 - 55
535327ASPASPMETMETJH6 - 556 - 55
545427ASPASPMETMETKK6 - 556 - 55
555528ASPASPMETMETJH6 - 556 - 55
565628ASPASPMETMETDL6 - 556 - 55
575729ASPASPMETMETNI6 - 556 - 55
585829ASPASPMETMETCJ6 - 556 - 55
595930ASPASPMETMETNI6 - 556 - 55
606030ASPASPMETMETKK6 - 556 - 55
616131ASPASPMETMETNI6 - 556 - 55
626231ASPASPMETMETDL6 - 556 - 55
636332ASPASPPHEPHECJ6 - 566 - 56
646432ASPASPPHEPHEKK6 - 566 - 56
656533ASPASPPHEPHECJ6 - 566 - 56
666633ASPASPPHEPHEDL6 - 566 - 56
676734ASPASPPHEPHEKK6 - 566 - 56
686834ASPASPPHEPHEDL6 - 566 - 56

NCS ensembles :
IDDetails
1Local NCS retraints between domains: 1 2
2Local NCS retraints between domains: 3 4
3Local NCS retraints between domains: 5 6
4Local NCS retraints between domains: 7 8
5Local NCS retraints between domains: 9 10
6Local NCS retraints between domains: 11 12
7Local NCS retraints between domains: 13 14
8Local NCS retraints between domains: 15 16
9Local NCS retraints between domains: 17 18
10Local NCS retraints between domains: 19 20
11Local NCS retraints between domains: 21 22
12Local NCS retraints between domains: 23 24
13Local NCS retraints between domains: 25 26
14Local NCS retraints between domains: 27 28
15Local NCS retraints between domains: 29 30
16Local NCS retraints between domains: 31 32
17Local NCS retraints between domains: 33 34
18Local NCS retraints between domains: 35 36
19Local NCS retraints between domains: 37 38
20Local NCS retraints between domains: 39 40
21Local NCS retraints between domains: 41 42
22Local NCS retraints between domains: 43 44
23Local NCS retraints between domains: 45 46
24Local NCS retraints between domains: 47 48
25Local NCS retraints between domains: 49 50
26Local NCS retraints between domains: 51 52
27Local NCS retraints between domains: 53 54
28Local NCS retraints between domains: 55 56
29Local NCS retraints between domains: 57 58
30Local NCS retraints between domains: 59 60
31Local NCS retraints between domains: 61 62
32Local NCS retraints between domains: 63 64
33Local NCS retraints between domains: 65 66
34Local NCS retraints between domains: 67 68

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Components

#1: Protein
Uracil-DNA glycosylase / UDG


Mass: 26043.527 Da / Num. of mol.: 4
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Bacillus wiedmannii (bacteria) / Gene: ung, COF57_03435 / Production host: Escherichia coli (E. coli) / References: UniProt: A0A2C5A1M3, uracil-DNA glycosylase
#2: Protein
Bacillus phage VMY22 p56


Mass: 6723.735 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Bacillus phage VMY22 (virus) / Gene: VMY22_4 / Production host: Escherichia coli (E. coli) / References: UniProt: A0A0N9SK00
#3: Chemical
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL


Mass: 92.094 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: C3H8O3
#4: Chemical
ChemComp-IOD / IODIDE ION


Mass: 126.904 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: I
#5: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 129 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.47 Å3/Da / Density % sol: 50.12 %
Crystal growTemperature: 289.15 K / Method: vapor diffusion, sitting drop
Details: 0.2 M Sodium iodide, 0.1M Bis-tris propane pH 6.5, 20% PEG 3350

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Data collection

DiffractionMean temperature: 289.15 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: Diamond / Beamline: I04 / Wavelength: 0.9762 Å
DetectorType: DECTRIS EIGER2 XE 16M / Detector: PIXEL / Date: Apr 21, 2017
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.9762 Å / Relative weight: 1
ReflectionResolution: 2.45→48.87 Å / Num. obs: 56337 / % possible obs: 99.8 % / Redundancy: 4.4 % / CC1/2: 0.993 / Net I/σ(I): 2.53
Reflection shellResolution: 2.45→2.52 Å / Num. unique obs: 4587 / CC1/2: 0.821

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Processing

Software
NameVersionClassification
REFMAC5.8refinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 4L5N
Resolution: 2.45→48.87 Å / Cor.coef. Fo:Fc: 0.937 / Cor.coef. Fo:Fc free: 0.919 / SU B: 9.41 / SU ML: 0.203 / Cross valid method: FREE R-VALUE / ESU R: 0.56 / ESU R Free: 0.269
RfactorNum. reflection% reflection
Rfree0.237 2745 4.874 %
Rwork0.2044 53573 -
all0.206 --
obs-56318 99.674 %
Solvent computationIon probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK BULK SOLVENT
Displacement parametersBiso mean: 34.39 Å2
Baniso -1Baniso -2Baniso -3
1-0.146 Å20 Å2-0.308 Å2
2--1.136 Å2-0 Å2
3----0.797 Å2
Refinement stepCycle: LAST / Resolution: 2.45→48.87 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms10913 0 52 129 11094
Refine LS restraints
Refine-IDTypeDev idealDev ideal targetNumber
X-RAY DIFFRACTIONr_bond_refined_d0.0070.01311214
X-RAY DIFFRACTIONr_bond_other_d0.0010.01610531
X-RAY DIFFRACTIONr_angle_refined_deg1.4131.64615159
X-RAY DIFFRACTIONr_angle_other_deg1.1891.5824353
X-RAY DIFFRACTIONr_dihedral_angle_1_deg6.50551310
X-RAY DIFFRACTIONr_dihedral_angle_2_deg33.74923.937602
X-RAY DIFFRACTIONr_dihedral_angle_3_deg15.121152034
X-RAY DIFFRACTIONr_dihedral_angle_4_deg20.771544
X-RAY DIFFRACTIONr_chiral_restr0.0650.21424
X-RAY DIFFRACTIONr_gen_planes_refined0.0060.0212517
X-RAY DIFFRACTIONr_gen_planes_other0.0010.022499
X-RAY DIFFRACTIONr_nbd_refined0.1970.21913
X-RAY DIFFRACTIONr_symmetry_nbd_other0.1720.29517
X-RAY DIFFRACTIONr_nbtor_refined0.1640.25188
X-RAY DIFFRACTIONr_symmetry_nbtor_other0.0740.25163
X-RAY DIFFRACTIONr_xyhbond_nbd_refined0.140.2264
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_other0.0730.23
X-RAY DIFFRACTIONr_symmetry_nbd_refined0.1210.214
X-RAY DIFFRACTIONr_nbd_other0.1990.237
X-RAY DIFFRACTIONr_symmetry_xyhbond_nbd_refined0.240.22
X-RAY DIFFRACTIONr_mcbond_it2.3963.4625276
X-RAY DIFFRACTIONr_mcbond_other2.3963.4625275
X-RAY DIFFRACTIONr_mcangle_it3.6765.1856574
X-RAY DIFFRACTIONr_mcangle_other3.6765.1856575
X-RAY DIFFRACTIONr_scbond_it2.8283.7935938
X-RAY DIFFRACTIONr_scbond_other2.8263.7935938
X-RAY DIFFRACTIONr_scangle_it4.4585.5498585
X-RAY DIFFRACTIONr_scangle_other4.4575.5488585
X-RAY DIFFRACTIONr_lrange_it5.98538.6212009
X-RAY DIFFRACTIONr_lrange_other5.98438.62611995
X-RAY DIFFRACTIONr_ncsr_local_group_10.0760.057368
X-RAY DIFFRACTIONr_ncsr_local_group_20.0730.057439
X-RAY DIFFRACTIONr_ncsr_local_group_30.0580.057491
X-RAY DIFFRACTIONr_ncsr_local_group_40.0710.057355
X-RAY DIFFRACTIONr_ncsr_local_group_50.0750.057348
X-RAY DIFFRACTIONr_ncsr_local_group_60.080.057449
X-RAY DIFFRACTIONr_ncsr_local_group_70.0840.051626
X-RAY DIFFRACTIONr_ncsr_local_group_80.1180.051516
X-RAY DIFFRACTIONr_ncsr_local_group_90.1280.051514
X-RAY DIFFRACTIONr_ncsr_local_group_100.1190.051507
X-RAY DIFFRACTIONr_ncsr_local_group_110.1040.051456
X-RAY DIFFRACTIONr_ncsr_local_group_120.0880.051492
X-RAY DIFFRACTIONr_ncsr_local_group_130.1140.051462
X-RAY DIFFRACTIONr_ncsr_local_group_140.1220.051520
X-RAY DIFFRACTIONr_ncsr_local_group_150.1250.051514
X-RAY DIFFRACTIONr_ncsr_local_group_160.1170.051505
X-RAY DIFFRACTIONr_ncsr_local_group_170.1170.051468
X-RAY DIFFRACTIONr_ncsr_local_group_180.0930.051503
X-RAY DIFFRACTIONr_ncsr_local_group_190.1120.051460
X-RAY DIFFRACTIONr_ncsr_local_group_200.0930.051608
X-RAY DIFFRACTIONr_ncsr_local_group_210.0950.051596
X-RAY DIFFRACTIONr_ncsr_local_group_220.1020.051467
X-RAY DIFFRACTIONr_ncsr_local_group_230.1090.051473
X-RAY DIFFRACTIONr_ncsr_local_group_240.0850.051516
X-RAY DIFFRACTIONr_ncsr_local_group_250.0550.051644
X-RAY DIFFRACTIONr_ncsr_local_group_260.0560.051515
X-RAY DIFFRACTIONr_ncsr_local_group_270.1060.051483
X-RAY DIFFRACTIONr_ncsr_local_group_280.0240.051565
X-RAY DIFFRACTIONr_ncsr_local_group_290.0610.051497
X-RAY DIFFRACTIONr_ncsr_local_group_300.1120.051463
X-RAY DIFFRACTIONr_ncsr_local_group_310.0490.051540
X-RAY DIFFRACTIONr_ncsr_local_group_320.1060.051515
X-RAY DIFFRACTIONr_ncsr_local_group_330.0630.051549
X-RAY DIFFRACTIONr_ncsr_local_group_340.10.051506
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDTypeRms dev position (Å)Weight position
11IX-RAY DIFFRACTIONLocal ncs0.075870.05009
12MX-RAY DIFFRACTIONLocal ncs0.075870.05009
23IX-RAY DIFFRACTIONLocal ncs0.072760.05009
24AX-RAY DIFFRACTIONLocal ncs0.072760.05009
35IX-RAY DIFFRACTIONLocal ncs0.057640.05009
36BX-RAY DIFFRACTIONLocal ncs0.057640.05009
47MX-RAY DIFFRACTIONLocal ncs0.070970.05009
48AX-RAY DIFFRACTIONLocal ncs0.070970.05009
59MX-RAY DIFFRACTIONLocal ncs0.075030.05009
510BX-RAY DIFFRACTIONLocal ncs0.075030.05009
611AX-RAY DIFFRACTIONLocal ncs0.080490.05009
612BX-RAY DIFFRACTIONLocal ncs0.080490.05009
713OX-RAY DIFFRACTIONLocal ncs0.08350.05009
714EX-RAY DIFFRACTIONLocal ncs0.08350.05009
815OX-RAY DIFFRACTIONLocal ncs0.118050.05009
816FX-RAY DIFFRACTIONLocal ncs0.118050.05009
917OX-RAY DIFFRACTIONLocal ncs0.127940.05008
918JX-RAY DIFFRACTIONLocal ncs0.127940.05008
1019OX-RAY DIFFRACTIONLocal ncs0.119330.05007
1020NX-RAY DIFFRACTIONLocal ncs0.119330.05007
1121OX-RAY DIFFRACTIONLocal ncs0.104410.05008
1122CX-RAY DIFFRACTIONLocal ncs0.104410.05008
1223OX-RAY DIFFRACTIONLocal ncs0.087880.05009
1224KX-RAY DIFFRACTIONLocal ncs0.087880.05009
1325OX-RAY DIFFRACTIONLocal ncs0.113820.05008
1326DX-RAY DIFFRACTIONLocal ncs0.113820.05008
1427EX-RAY DIFFRACTIONLocal ncs0.121550.05009
1428FX-RAY DIFFRACTIONLocal ncs0.121550.05009
1529EX-RAY DIFFRACTIONLocal ncs0.125480.05008
1530JX-RAY DIFFRACTIONLocal ncs0.125480.05008
1631EX-RAY DIFFRACTIONLocal ncs0.116810.05008
1632NX-RAY DIFFRACTIONLocal ncs0.116810.05008
1733EX-RAY DIFFRACTIONLocal ncs0.116910.05008
1734CX-RAY DIFFRACTIONLocal ncs0.116910.05008
1835EX-RAY DIFFRACTIONLocal ncs0.092690.0501
1836KX-RAY DIFFRACTIONLocal ncs0.092690.0501
1937EX-RAY DIFFRACTIONLocal ncs0.111810.05008
1938DX-RAY DIFFRACTIONLocal ncs0.111810.05008
2039FX-RAY DIFFRACTIONLocal ncs0.093160.05009
2040JX-RAY DIFFRACTIONLocal ncs0.093160.05009
2141FX-RAY DIFFRACTIONLocal ncs0.094840.05009
2142NX-RAY DIFFRACTIONLocal ncs0.094840.05009
2243FX-RAY DIFFRACTIONLocal ncs0.102340.05009
2244CX-RAY DIFFRACTIONLocal ncs0.102340.05009
2345FX-RAY DIFFRACTIONLocal ncs0.108880.05009
2346KX-RAY DIFFRACTIONLocal ncs0.108880.05009
2447FX-RAY DIFFRACTIONLocal ncs0.08530.05009
2448DX-RAY DIFFRACTIONLocal ncs0.08530.05009
2549JX-RAY DIFFRACTIONLocal ncs0.054580.05009
2550NX-RAY DIFFRACTIONLocal ncs0.054580.05009
2651JX-RAY DIFFRACTIONLocal ncs0.05550.05009
2652CX-RAY DIFFRACTIONLocal ncs0.05550.05009
2753JX-RAY DIFFRACTIONLocal ncs0.10650.05009
2754KX-RAY DIFFRACTIONLocal ncs0.10650.05009
2855JX-RAY DIFFRACTIONLocal ncs0.024130.0501
2856DX-RAY DIFFRACTIONLocal ncs0.024130.0501
2957NX-RAY DIFFRACTIONLocal ncs0.060950.05009
2958CX-RAY DIFFRACTIONLocal ncs0.060950.05009
3059NX-RAY DIFFRACTIONLocal ncs0.112050.05008
3060KX-RAY DIFFRACTIONLocal ncs0.112050.05008
3161NX-RAY DIFFRACTIONLocal ncs0.048840.05009
3162DX-RAY DIFFRACTIONLocal ncs0.048840.05009
3263CX-RAY DIFFRACTIONLocal ncs0.106460.05008
3264KX-RAY DIFFRACTIONLocal ncs0.106460.05008
3365CX-RAY DIFFRACTIONLocal ncs0.062590.05009
3366DX-RAY DIFFRACTIONLocal ncs0.062590.05009
3467KX-RAY DIFFRACTIONLocal ncs0.10040.05008
3468DX-RAY DIFFRACTIONLocal ncs0.10040.05008
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.45-2.5140.3811940.3183950X-RAY DIFFRACTION99.7593
2.514-2.5820.3542100.3133839X-RAY DIFFRACTION99.8028
2.582-2.6570.3441930.2933714X-RAY DIFFRACTION99.5668
2.657-2.7390.3191870.2723618X-RAY DIFFRACTION99.7902
2.739-2.8290.3121870.2533502X-RAY DIFFRACTION99.4608
2.829-2.9280.2711720.2413429X-RAY DIFFRACTION99.3379
2.928-3.0380.2851910.2383258X-RAY DIFFRACTION99.6821
3.038-3.1620.2761680.2353157X-RAY DIFFRACTION99.8199
3.162-3.3030.2751520.2183044X-RAY DIFFRACTION99.875
3.303-3.4640.2571280.2182934X-RAY DIFFRACTION99.9347
3.464-3.6510.2391300.2092789X-RAY DIFFRACTION99.829
3.651-3.8720.2131550.1892617X-RAY DIFFRACTION99.8919
3.872-4.1390.1621230.1612454X-RAY DIFFRACTION99.652
4.139-4.470.1721100.1422328X-RAY DIFFRACTION99.7953
4.47-4.8950.1651120.1382096X-RAY DIFFRACTION99.7741
4.895-5.4720.196920.1561926X-RAY DIFFRACTION99.8022
5.472-6.3150.2131000.1881698X-RAY DIFFRACTION99.778
6.315-7.7260.156550.1541468X-RAY DIFFRACTION99.4125
7.726-100.142650.1321114X-RAY DIFFRACTION99.4098
8-100.305210.248638X-RAY DIFFRACTION96.6276

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