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- PDB-8ai9: S10T variant of glutathione transferase Chi 1 from Synechocystis ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8ai9 | ||||||
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Title | S10T variant of glutathione transferase Chi 1 from Synechocystis sp. PCC 6803 in complex with glutathione | ||||||
![]() | Glutathione S-transferase family protein | ||||||
![]() | TRANSFERASE / Glutathione transferase / cyanobateria / chi class / glutathione | ||||||
Function / homology | GLUTATHIONE / : ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Didierjean, C. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Biochemical and Structural Characterization of Chi-Class Glutathione Transferases: A Snapshot on the Glutathione Transferase Encoded by sll0067 Gene in the Cyanobacterium Synechocystis sp. Strain PCC 6803. Authors: Mocchetti, E. / Morette, L. / Mulliert, G. / Mathiot, S. / Guillot, B. / Dehez, F. / Chauvat, F. / Cassier-Chauvat, C. / Brochier-Armanet, C. / Didierjean, C. / Hecker, A. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 98.8 KB | Display | ![]() |
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PDB format | ![]() | 74.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 20.4 KB | Display | |
Data in CIF | ![]() | 31.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8ai8SC ![]() 8aibC S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 21480.760 Da / Num. of mol.: 2 / Mutation: S10T Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal grow | Temperature: 277 K / Method: microbatch Details: 16% (w/v) PEG 8000, 40 mM potassium phosphate monobasic and 20% (w/v) glycerol |
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-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Oct 11, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97951 Å / Relative weight: 1 |
Reflection | Resolution: 1.7→48.41 Å / Num. obs: 93931 / % possible obs: 100 % / Redundancy: 13.2 % / Biso Wilson estimate: 28.6 Å2 / CC1/2: 0.999 / Rmerge(I) obs: 0.087 / Net I/σ(I): 17 |
Reflection shell | Resolution: 1.7→1.73 Å / Rmerge(I) obs: 1.593 / Mean I/σ(I) obs: 2 / Num. unique obs: 4590 / CC1/2: 0.836 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 8AI8 Resolution: 1.7→24.19 Å / Cor.coef. Fo:Fc: 0.94 / Cor.coef. Fo:Fc free: 0.939 / SU R Cruickshank DPI: 0.073 / Cross valid method: THROUGHOUT / SU R Blow DPI: 0.079 / SU Rfree Blow DPI: 0.077 / SU Rfree Cruickshank DPI: 0.073
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Displacement parameters | Biso mean: 32.52 Å2
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Refine analyze | Luzzati coordinate error obs: 0.24 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.7→24.19 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.7→1.71 Å
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