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Open data
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Basic information
Entry | Database: PDB / ID: 7zpv | ||||||
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Title | Room temperature SSX crystal structure of CTX-M-14 | ||||||
![]() | Beta-lactamase![]() | ||||||
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Function / homology | ![]() beta-lactam antibiotic catabolic process / ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Oberthuer, D. / Perbandt, M. / Prester, A. / Rohde, H. / Betzel, C. / Yefanov, O. | ||||||
Funding support | 1items
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![]() | ![]() Title: Rapid and efficient room-temperature serial synchrotron crystallography using the CFEL TapeDrive. Authors: Zielinski, K.A. / Prester, A. / Andaleeb, H. / Bui, S. / Yefanov, O. / Catapano, L. / Henkel, A. / Wiedorn, M.O. / Lorbeer, O. / Crosas, E. / Meyer, J. / Mariani, V. / Domaracky, M. / White, ...Authors: Zielinski, K.A. / Prester, A. / Andaleeb, H. / Bui, S. / Yefanov, O. / Catapano, L. / Henkel, A. / Wiedorn, M.O. / Lorbeer, O. / Crosas, E. / Meyer, J. / Mariani, V. / Domaracky, M. / White, T.A. / Fleckenstein, H. / Sarrou, I. / Werner, N. / Betzel, C. / Rohde, H. / Aepfelbacher, M. / Chapman, H.N. / Perbandt, M. / Steiner, R.A. / Oberthuer, D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 168.3 KB | Display | ![]() |
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PDB format | ![]() | 129.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 7qarC ![]() 7zq0C ![]() 8af4C ![]() 8af5C ![]() 8af6C ![]() 8af7C ![]() 8af8C ![]() 6gthS S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 27771.314 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() | ||||
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#2: Chemical | ![]() #3: Water | ChemComp-HOH / | ![]() Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.16 Å3/Da / Density % sol: 43.19 % |
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Crystal grow![]() | Temperature: 293 K / Method: batch mode / pH: 4.5 Details: 50% CTX-M-14 solution (22 mg/ml) was mixed with 45% precipitant solution (40% PEG8000, 200mM lithium sulfate, 100mM sodium acetate, pH 4.5) and with 5% undiluted seed stock in batch crystallization setups |
-Data collection
Diffraction | Mean temperature: 295 K / Serial crystal experiment: Y |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Dec 11, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.4→17.77 Å / Num. obs: 49225 / % possible obs: 100 % / Redundancy: 2217 % / CC1/2: 0.991 / CC star: 0.998 / R split: 0.072 / Net I/σ(I): 9.11 |
Reflection shell | Resolution: 1.4→1.42 Å / Redundancy: 1400 % / Mean I/σ(I) obs: 0.69 / Num. unique obs: 4733 / CC1/2: 0.266 / CC star: 0.648 / R split: 0.166 / % possible all: 100 |
Serial crystallography sample delivery | Description: CFEL TapeDrive / Method: injection |
Serial crystallography sample delivery injection | Description: TapeDrive / Flow rate: 1 µL/min / Power by: ElveFlow |
Serial crystallography data reduction | Frames total: 127170 / Lattices indexed: 61331 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 6GTH Resolution: 1.4→17.77 Å / Cross valid method: FREE R-VALUE Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Displacement parameters | Biso mean: 34.26 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.4→17.77 Å
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Refine LS restraints |
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