Arachidonate production from DAG / acylglycerol catabolic process / Acyl chain remodeling of DAG and TAG / acylglycerol lipase / monoacylglycerol catabolic process / regulation of endocannabinoid signaling pathway / triglyceride catabolic process / monoacylglycerol lipase activity / arachidonate metabolic process / regulation of sensory perception of pain ...Arachidonate production from DAG / acylglycerol catabolic process / Acyl chain remodeling of DAG and TAG / acylglycerol lipase / monoacylglycerol catabolic process / regulation of endocannabinoid signaling pathway / triglyceride catabolic process / monoacylglycerol lipase activity / arachidonate metabolic process / regulation of sensory perception of pain / lysophospholipase activity / Triglyceride catabolism / regulation of signal transduction / lipid metabolic process / fatty acid biosynthetic process / regulation of inflammatory response / inflammatory response / endoplasmic reticulum membrane / protein homodimerization activity / membrane / plasma membrane / cytosol Similarity search - Function
Method to determine structure: MOLECULAR REPLACEMENT Starting model: in house pdb Resolution: 1.16→63.71 Å / Cor.coef. Fo:Fc: 0.97 / Cor.coef. Fo:Fc free: 0.97 / SU R Cruickshank DPI: 0.032 / Cross valid method: THROUGHOUT / SU R Blow DPI: 0.034 / SU Rfree Blow DPI: 0.034 / SU Rfree Cruickshank DPI: 0.032
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.1845
6177
-
RANDOM
Rwork
0.1765
-
-
-
obs
0.1769
122098
99.8 %
-
Displacement parameters
Biso mean: 20.23 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-0.3094 Å2
0 Å2
0 Å2
2-
-
2.0722 Å2
0 Å2
3-
-
-
-1.7628 Å2
Refine analyze
Luzzati coordinate error obs: 0.15 Å
Refinement step
Cycle: LAST / Resolution: 1.16→63.71 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2238
0
28
380
2646
Refine LS restraints
Refine-ID
Type
Dev ideal
Number
Restraint function
Weight
X-RAY DIFFRACTION
t_bond_d
0.008
2413
HARMONIC
2
X-RAY DIFFRACTION
t_angle_deg
0.95
3304
HARMONIC
2
X-RAY DIFFRACTION
t_dihedral_angle_d
861
SINUSOIDAL
2
X-RAY DIFFRACTION
t_gen_planes
422
HARMONIC
5
X-RAY DIFFRACTION
t_it
2413
HARMONIC
10
X-RAY DIFFRACTION
t_chiral_improper_torsion
309
SEMIHARMONIC
5
X-RAY DIFFRACTION
t_ideal_dist_contact
2684
SEMIHARMONIC
4
X-RAY DIFFRACTION
t_omega_torsion
4.09
X-RAY DIFFRACTION
t_other_torsion
13.78
LS refinement shell
Resolution: 1.16→1.17 Å
Rfactor
Num. reflection
% reflection
Rfree
0.3882
113
-
Rwork
0.3404
-
-
obs
0.3425
2442
98.82 %
Refinement TLS params.
Origin x: -17.3087 Å / Origin y: 20.0836 Å / Origin z: -0.6322 Å
11
12
13
21
22
23
31
32
33
T
-0.0117 Å2
0.0008 Å2
0.0074 Å2
-
-0.0194 Å2
0.0046 Å2
-
-
0.0028 Å2
L
0.0966 °2
-0.1435 °2
-0.0121 °2
-
0.7222 °2
-0.02 °2
-
-
0.3852 °2
S
-0.0172 Å °
-0.0038 Å °
0.016 Å °
-0.0038 Å °
-0.0067 Å °
-0.0032 Å °
0.016 Å °
-0.0032 Å °
0.024 Å °
Refinement TLS group
ID
Refine-ID
Refine TLS-ID
Selection details
Auth asym-ID
Auth seq-ID
1
X-RAY DIFFRACTION
1
{ A|* }
A
7 - 295
2
X-RAY DIFFRACTION
1
{ A|* }
A
301
+
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