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Open data
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Basic information
Entry | Database: PDB / ID: 7xw0 | |||||||||
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Title | Crystal structure of pOmpT | |||||||||
![]() | OmpT | |||||||||
![]() | HYDROLASE / out membrane protein / protease | |||||||||
Function / homology | ![]() omptin / cell outer membrane / aspartic-type endopeptidase activity / proteolysis Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Jiang, L.Y. / Ran, T.T. / Gao, S. / Wang, W.W. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of pOmpT Authors: Liu, J.H. / Ran, T.T. / Jiang, L.Y. / Wang, W.W. / Gao, S. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 117.3 KB | Display | ![]() |
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PDB format | ![]() | Display | ![]() | |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 445.1 KB | Display | ![]() |
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Full document | ![]() | 460.9 KB | Display | |
Data in XML | ![]() | 22 KB | Display | |
Data in CIF | ![]() | 28.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1i78S S: Starting model for refinement |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 33729.098 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.83 Å3/Da / Density % sol: 56.51 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, sitting drop / Details: MPD |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Nov 1, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97915 Å / Relative weight: 1 |
Reflection | Resolution: 2.95→19.89 Å / Num. obs: 16591 / % possible obs: 99.6 % / Observed criterion σ(I): 1.3 / Redundancy: 19.8 % / CC1/2: 0.999 / Rpim(I) all: 0.038 / Rrim(I) all: 0.17 / Net I/σ(I): 13.4 |
Reflection shell | Resolution: 2.95→3.13 Å / Num. unique obs: 2635 / CC1/2: 0.586 / Rpim(I) all: 0.634 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1i78 Resolution: 2.95→19.6 Å / Cross valid method: FREE R-VALUE Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Displacement parameters | Biso mean: 95.09 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.95→19.6 Å
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Refine LS restraints |
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