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- PDB-7wfs: Acyl-Coenzyme A Binding Protein 103 (LMJF_17_0620) of Leishmania ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7wfs | ||||||
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Title | Acyl-Coenzyme A Binding Protein 103 (LMJF_17_0620) of Leishmania major in triclinic crystal form | ||||||
![]() | ACB domain-containing protein | ||||||
![]() | LIPID BINDING PROTEIN / Acyl-Coenzyme A Binding Protein | ||||||
Function / homology | ![]() fatty-acyl-CoA binding / ciliary plasm / fatty acid metabolic process / nucleoplasm / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Verma, S. / Sundd, M. | ||||||
Funding support | 1items
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![]() | ![]() Title: Acyl-Coenzyme A Binding Protein 103 (LMJF_17_0620) of Leishmania major in monoclinic crystal form Authors: Verma, S. / Sundd, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 105 KB | Display | ![]() |
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PDB format | ![]() | 67.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 432.5 KB | Display | ![]() |
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Full document | ![]() | 434.1 KB | Display | |
Data in XML | ![]() | 10.8 KB | Display | |
Data in CIF | ![]() | 14.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7desS S: Starting model for refinement |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11544.057 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 44.11 % / Description: rod-shaped crystals |
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Crystal grow | Temperature: 289.15 K / Method: vapor diffusion, hanging drop / pH: 8.5 / Details: 0.1M TrisCl 2M Ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K / Ambient temp details: Oxford Cryostream -700 / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MAR scanner 345 mm plate / Detector: IMAGE PLATE / Date: Dec 17, 2018 |
Radiation | Monochromator: Mirrors / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97949 Å / Relative weight: 1 |
Reflection | Resolution: 1.4→40.8 Å / Num. obs: 36124 / % possible obs: 93.9 % / Redundancy: 1.8 % / Biso Wilson estimate: 14.45 Å2 / CC1/2: 0.99 / Net I/σ(I): 16.5 |
Reflection shell | Resolution: 1.4→1.42 Å / Num. unique obs: 1722 / CC1/2: 0.816 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 7DES Resolution: 1.4→22.73 Å / SU ML: 0.3058 / Cross valid method: FREE R-VALUE / σ(F): 1.97 / Phase error: 36.0756 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 27.65 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.4→22.73 Å
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Refine LS restraints |
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LS refinement shell |
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