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- PDB-7vxo: Structure of the C-terminal head domain of the Fowl Adenovirus se... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7vxo | |||||||||
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Title | Structure of the C-terminal head domain of the Fowl Adenovirus serotype 4 (FAdV-4) fibre-2 protein | |||||||||
![]() | Fiber-2![]() | |||||||||
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Function / homology | ![]() ![]() ![]() ![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Song, Y.P. / Wei, Q. | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of the C-terminal head domain of the Fowl Adenovirus serotype 4 (FAdV-4) fibre-2 protein Authors: Song, Y.P. / Wei, Q. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 63.9 KB | Display | ![]() |
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PDB format | ![]() | 43.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2vtwS S: Starting model for refinement |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | ![]() Mass: 25375.217 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.9 Å3/Da / Density % sol: 35.43 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, sitting drop Details: 0.2M Ammonium sulfate, 0.1M BIS-TRIS pH6.5, 25% w/v Polyethylene glycol 3350 |
-Data collection
Diffraction | Mean temperature: 293 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210r / Detector: CCD / Date: Jun 26, 2021 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.6→30 Å / Num. obs: 25997 / % possible obs: 98.6 % / Redundancy: 18.3 % / Rmerge(I) obs: 0.103 / Rpim(I) all: 0.024 / Rrim(I) all: 0.106 / Χ2: 1.023 / Net I/σ(I): 6.7 / Num. measured all: 475715 |
Reflection shell | Resolution: 1.6→1.66 Å / Redundancy: 14.2 % / Rmerge(I) obs: 0.296 / Num. unique obs: 2808 / CC1/2: 0.999 / Rpim(I) all: 0.014 / Rrim(I) all: 0.06 / Χ2: 0.859 / % possible all: 86.5 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 2VTW Resolution: 1.6→25.24 Å / Cor.coef. Fo:Fc: 0.969 / Cor.coef. Fo:Fc free: 0.949 / SU B: 1.18 / SU ML: 0.043 / Cross valid method: THROUGHOUT / σ(F): 0 / ESU R: 0.075 / ESU R Free: 0.082 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 101.61 Å2 / Biso mean: 14.43 Å2 / Biso min: 6.32 Å2
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Refinement step | Cycle: final / Resolution: 1.6→25.24 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.6→1.65 Å / Rfactor Rfree error: 0 / Total num. of bins used: 20
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