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- PDB-7vec: Crystal structure of GABARAP complexed with the TEX264 LIR phosph... -

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Basic information

Entry
Database: PDB / ID: 7vec
TitleCrystal structure of GABARAP complexed with the TEX264 LIR phosphorylated at Ser271 and Ser272
Components
  • Gamma-aminobutyric acid receptor-associated protein
  • TEX264 phospho-LIR
KeywordsSIGNALING PROTEIN / Autophagy / ER-phagy
Function / homology
Function and homology information


positive regulation of protein K48-linked ubiquitination / regulation of Rac protein signal transduction / GABA receptor binding / cellular response to nitrogen starvation / phosphatidylethanolamine binding / TBC/RABGAPs / microtubule associated complex / Macroautophagy / beta-tubulin binding / axoneme ...positive regulation of protein K48-linked ubiquitination / regulation of Rac protein signal transduction / GABA receptor binding / cellular response to nitrogen starvation / phosphatidylethanolamine binding / TBC/RABGAPs / microtubule associated complex / Macroautophagy / beta-tubulin binding / axoneme / autophagosome membrane / autophagosome maturation / autophagosome assembly / extrinsic apoptotic signaling pathway via death domain receptors / smooth endoplasmic reticulum / autophagosome / protein targeting / sperm midpiece / microtubule cytoskeleton organization / protein transport / positive regulation of proteasomal ubiquitin-dependent protein catabolic process / actin cytoskeleton / cytoplasmic vesicle / microtubule binding / chemical synaptic transmission / microtubule / lysosome / Golgi membrane / ubiquitin protein ligase binding / synapse / plasma membrane / cytosol
Similarity search - Function
Autophagy protein Atg8 ubiquitin-like / Autophagy protein Atg8 ubiquitin like / Ubiquitin-like domain superfamily
Similarity search - Domain/homology
Gamma-aminobutyric acid receptor-associated protein
Similarity search - Component
Biological speciesHomo sapiens (human)
MethodX-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 3 Å
AuthorsNoda, N.N.
Funding support Japan, 2items
OrganizationGrant numberCountry
Japan Science and TechnologyJPMJCR20E3 Japan
Japan Society for the Promotion of Science (JSPS)19H05707 Japan
CitationJournal: Embo Rep. / Year: 2022
Title: Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Authors: Chino, H. / Yamasaki, A. / Ode, K.L. / Ueda, H.R. / Noda, N.N. / Mizushima, N.
History
DepositionSep 8, 2021Deposition site: PDBJ / Processing site: PDBJ
Revision 1.0Mar 30, 2022Provider: repository / Type: Initial release
Revision 1.1Oct 11, 2023Group: Data collection / Database references
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / citation / citation_author
Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _citation_author.identifier_ORCID
Revision 1.2Nov 29, 2023Group: Refinement description / Category: pdbx_initial_refinement_model

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Gamma-aminobutyric acid receptor-associated protein
B: Gamma-aminobutyric acid receptor-associated protein
C: Gamma-aminobutyric acid receptor-associated protein
D: Gamma-aminobutyric acid receptor-associated protein
E: Gamma-aminobutyric acid receptor-associated protein
F: Gamma-aminobutyric acid receptor-associated protein
G: Gamma-aminobutyric acid receptor-associated protein
H: Gamma-aminobutyric acid receptor-associated protein
I: Gamma-aminobutyric acid receptor-associated protein
J: Gamma-aminobutyric acid receptor-associated protein
K: Gamma-aminobutyric acid receptor-associated protein
L: Gamma-aminobutyric acid receptor-associated protein
M: TEX264 phospho-LIR
N: TEX264 phospho-LIR
O: TEX264 phospho-LIR
P: TEX264 phospho-LIR
Q: TEX264 phospho-LIR
R: TEX264 phospho-LIR
S: TEX264 phospho-LIR
T: TEX264 phospho-LIR
U: TEX264 phospho-LIR
V: TEX264 phospho-LIR
X: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)181,68023
Polymers181,68023
Non-polymers00
Water00
1
A: Gamma-aminobutyric acid receptor-associated protein
M: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1380 Å2
ΔGint-11 kcal/mol
Surface area6950 Å2
MethodPISA
2
B: Gamma-aminobutyric acid receptor-associated protein
N: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1390 Å2
ΔGint-11 kcal/mol
Surface area6910 Å2
MethodPISA
3
C: Gamma-aminobutyric acid receptor-associated protein
O: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1390 Å2
ΔGint-11 kcal/mol
Surface area6940 Å2
MethodPISA
4
D: Gamma-aminobutyric acid receptor-associated protein
P: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1370 Å2
ΔGint-12 kcal/mol
Surface area7020 Å2
MethodPISA
5
E: Gamma-aminobutyric acid receptor-associated protein
Q: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1330 Å2
ΔGint-13 kcal/mol
Surface area7300 Å2
MethodPISA
6
F: Gamma-aminobutyric acid receptor-associated protein
R: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1380 Å2
ΔGint-9 kcal/mol
Surface area7020 Å2
MethodPISA
7
G: Gamma-aminobutyric acid receptor-associated protein
S: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1400 Å2
ΔGint-11 kcal/mol
Surface area7130 Å2
MethodPISA
8
H: Gamma-aminobutyric acid receptor-associated protein
T: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1280 Å2
ΔGint-13 kcal/mol
Surface area7240 Å2
MethodPISA
9
I: Gamma-aminobutyric acid receptor-associated protein
U: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1150 Å2
ΔGint-10 kcal/mol
Surface area7000 Å2
MethodPISA
10
J: Gamma-aminobutyric acid receptor-associated protein
V: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area1350 Å2
ΔGint-9 kcal/mol
Surface area7180 Å2
MethodPISA
11
K: Gamma-aminobutyric acid receptor-associated protein


Theoretical massNumber of molelcules
Total (without water)13,9831
Polymers13,9831
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area0 Å2
ΔGint0 kcal/mol
Surface area6870 Å2
MethodPISA
12
L: Gamma-aminobutyric acid receptor-associated protein
X: TEX264 phospho-LIR


Theoretical massNumber of molelcules
Total (without water)15,2452
Polymers15,2452
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area930 Å2
ΔGint-6 kcal/mol
Surface area6790 Å2
MethodPISA
Unit cell
Length a, b, c (Å)200.480, 201.383, 211.816
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number22
Space group name H-MF222
Symmetry operation#1: x,y,z
#2: x,-y,-z
#3: -x,y,-z
#4: -x,-y,z
#5: x,y+1/2,z+1/2
#6: x,-y+1/2,-z+1/2
#7: -x,y+1/2,-z+1/2
#8: -x,-y+1/2,z+1/2
#9: x+1/2,y,z+1/2
#10: x+1/2,-y,-z+1/2
#11: -x+1/2,y,-z+1/2
#12: -x+1/2,-y,z+1/2
#13: x+1/2,y+1/2,z
#14: x+1/2,-y+1/2,-z
#15: -x+1/2,y+1/2,-z
#16: -x+1/2,-y+1/2,z

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Components

#1: Protein
Gamma-aminobutyric acid receptor-associated protein / GABA(A) receptor-associated protein / MM46


Mass: 13983.056 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: GABARAP, FLC3B, HT004 / Production host: Escherichia coli (E. coli) / References: UniProt: O95166
#2: Protein/peptide
TEX264 phospho-LIR


Mass: 1262.107 Da / Num. of mol.: 11 / Source method: obtained synthetically / Source: (synth.) Homo sapiens (human)
Has ligand of interestN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 3 Å3/Da / Density % sol: 59.01 %
Crystal growTemperature: 293 K / Method: vapor diffusion, sitting drop
Details: 30% PEG 4000, 0.2M ammonium acetate, 0.1M bis-Tris pH 5.6

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: ROTATING ANODE / Type: RIGAKU MICROMAX-007 HF / Wavelength: 1.54178 Å
DetectorType: RIGAKU HyPix-6000HE / Detector: PIXEL / Date: Jun 4, 2021
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 1.54178 Å / Relative weight: 1
ReflectionResolution: 3→30.48 Å / Num. obs: 42776 / % possible obs: 99.9 % / Redundancy: 8.7 % / CC1/2: 0.964 / Net I/σ(I): 6.5
Reflection shellResolution: 3→3.11 Å / Redundancy: 8 % / Mean I/σ(I) obs: 1.2 / Num. unique obs: 4477 / CC1/2: 0.608 / % possible all: 100

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Processing

Software
NameVersionClassification
PHENIX(1.17.1_3660: ???)refinement
CrysalisPro1.171.40.14adata reduction
Aimlessdata scaling
MrBUMPphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 5YIR
Resolution: 3→28.89 Å / SU ML: 0.43 / Cross valid method: FREE R-VALUE / σ(F): 1.33 / Phase error: 28.35 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.3007 2233 5.34 %
Rwork0.257 --
obs0.2594 41787 97.65 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement stepCycle: LAST / Resolution: 3→28.89 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms12376 0 0 0 12376
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00312703
X-RAY DIFFRACTIONf_angle_d0.67117160
X-RAY DIFFRACTIONf_dihedral_angle_d19.1924791
X-RAY DIFFRACTIONf_chiral_restr0.051764
X-RAY DIFFRACTIONf_plane_restr0.0052204
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3-3.070.41331550.37362477X-RAY DIFFRACTION99
3.07-3.140.32871000.31742525X-RAY DIFFRACTION100
3.14-3.210.32121750.27612495X-RAY DIFFRACTION100
3.21-3.30.29711550.26882502X-RAY DIFFRACTION100
3.3-3.40.30411520.25932524X-RAY DIFFRACTION100
3.4-3.510.31221340.26732468X-RAY DIFFRACTION100
3.51-3.630.56031180.46151912X-RAY DIFFRACTION76
3.63-3.780.52891280.47022307X-RAY DIFFRACTION92
3.78-3.950.37451420.30412470X-RAY DIFFRACTION98
3.95-4.160.24061860.23652449X-RAY DIFFRACTION100
4.16-4.420.23111640.1932517X-RAY DIFFRACTION100
4.42-4.760.2131930.16692572X-RAY DIFFRACTION100
4.76-5.230.18871600.16122531X-RAY DIFFRACTION100
5.23-5.980.2181310.17832554X-RAY DIFFRACTION100
5.98-7.520.22131160.19042604X-RAY DIFFRACTION100
7.52-28.890.20821240.16682647X-RAY DIFFRACTION99
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.0024-0.00170.00290.00120.0024-0.0039-0.04770.029-0.00240.0166-0.01350.01060.04660.017-00.1627-0.00850.0549-0.0115-0.11140.1454-62.057535.5256-17.0322
20.0030.00560.00480.00040.00430.0006-0.01330.0362-0.02990.03490.0325-0.0432-0.0326-0.02470-0.0438-0.1971-0.3231-0.1536-0.31580.0607-68.434324.2741-22.7653
30.0192-0.041-0.02880.02150.0207-0.0137-0.20090.225-0.1224-0.1474-0.0585-0.09690.12290.24020-0.49230.01320.2172-0.7383-0.4358-0.1733-50.286926.4453-20.1825
40.0021-0.0003-0.0010.00010.0006-0.0003-0.0056-0.00320.00630.01330.02060.008-0.00570.0152-00.12140.15880.01730.0624-0.13960.0991-44.619734.9764-9.907
5-0.00020.0011-0.00240.00130.0017-0.00210.0258-0.02220.00970.010.03110.0024-0.0007-0.0031-00.1280.18880.31720.0417-0.37780.1368-36.52910.6498-18.2483
60.00030.0047-0.00540.00420.0005-0.0019-0.05820.01370.0391-0.0389-0.04190.039-0.06410.026700.08470.13850.311-0.092-0.3750.0298-30.935118.1056-29.4378
7-0.00230.00390.00280.00910.00540.00470.04350.01620.01080.0666-0.0624-0.0530.04460.0097-00.1869-0.05310.0966-0.0245-0.1549-0.1159-28.69186.4713-29.6655
80.01010.00930.00770.0017-0.0051-0.0030.02840.07380.02870.0389-0.0803-0.04420.078-0.0583-0-0.0352-0.1418-0.17550.096-0.1479-0.1252-29.22660.6526-23.9337
90-0.00280.00280.0016-0.0006-0.0012-0.0223-0.041-0.0343-0.04-0.03480.02110.04510.03170-0.0654-0.2027-0.08690.1619-0.0798-0.2191-27.0309-6.5541-27.3238
10-0.0074-0.0080.00610.0020.0053-0.00110.11770.00580.10330.019-0.02030.06850.07550.0121-0-0.0846-0.2643-0.2051-0.1117-0.4838-0.4386-35.2523-7.7216-26.4407
110.00070.0002-0.00060.0010.0020.00230.00080.01260.0034-0.01560.01570.0271-0.01380.01060-0.12130.20660.1180.2083-0.245-0.0093-37.164.1099-36.4437
120.00040.00370.0060.00170.00180.00230.1124-0.03930.03960.05190.016-0.01920.0408-0.0687-00.0795-0.01830.05360.0928-0.0160.0329-36.52397.4904-27.3722
130.0009-0.0020.00030.00370.0020.001-0.0043-0.00680.00360.0119-0.0143-0.00280.0054-0.014500.0778-0.03880.19280.0136-0.24130.0777-41.941-6.9942-18.9815
140.00120.00280.0028-0.00150.00040.0030.0130.0140.0027-0.02530.0012-0.01680.0107-0.04070-0.17440.0164-0.15020.1247-0.06580.0714-32.4687-13.0575-43.8317
15-0.0009-0.0007-0.0026-0.0005-0.00140.00140.0057-0.0119-0.08310.0609-0.0480.0077-0.002-0.0365-0-0.1440.36530.2077-0.1644-0.13330.0041-21.7892-19.1909-35.4455
16-0.0002-0.00360.010.00430.00750.01230.0330.0521-0.02220.06750.0607-0.09820.0413-0.067-00.0720.0036-0.05290.1043-0.04280.0718-24.353-20.9366-50.8984
170.0012-0.00630.00070.00220.00450.00030.04950.0207-0.0387-0.03130.1280.0310.05120.0412-0-0.1507-0.0797-0.1727-0.0016-0.1383-0.1322-24.6279-20.8646-62.034
180.0022-0.0022-0.00610.0036-0.00330.0006-0.04520.03020.0315-0.06040.0376-0.0097-0.00130.092300.102-0.04450.10860.1347-0.0025-0.0895-15.7626-11.8634-53.03
190.01110.007-0.0011-0.0043-0.01420.0017-0.0860.07790.03820.121-0.0423-0.0318-0.0153-0.07820-0.28050.2292-0.4562-0.07670.2106-0.2691-23.0137-13.5396-46.1759
200.00020.0005-0.00060.0015-0.0006-0.00070.008-0.00330.0354-0.0057-0.01270.0090.0179-0.016400.0841-0.06020.0990.2104-0.0080.1338-30.0319-7.7215-61.1912
21-0.0003-0.0036-0.00530.0002-0.00250.00310.02580.0398-0.0388-0.020.0582-0.03330.01790.01950-0.05810.06610.18770.09830.0215-0.0756-16.505555.518-32.1112
22-0.00180.00090.0026-0.0075-0.0048-0.0006-0.10040.0512-0.01980.08540.0929-0.072-0.0250.02420-0.3006-0.16450.12360.06090.27770.0196-20.487163.9608-20.7548
230.006-0.00390.00740.0003-0.00140.0012-0.04590.0372-0.06150.03230.0386-0.0534-0.0359-0.031-0-0.00030.0681-0.13110.00730.2316-0.0695-23.247252.8491-19.5988
240.00070.0037-0.00190.0036-0.0032-0.00080.02290.00640.0046-0.01140.0450.0071-0.02030.03200.15350.07990.02020.22910.12480.2098-21.785143.9178-32.9327
250.00420.0008-0.0023-0.0008-0.00280.0005-0.0491-0.0178-0.0614-0.0075-0.0141-0.00180.01760.01240-0.1491-0.03350.1010.2174-0.03050.0204-24.87349.3788-16.0365
26-0.00020.00250.0051-0.0014-0.0034-0.0023-0.01490.0239-0.02470.0261-0.05240.0060.0466-0.0085-0-0.0036-0.04730.0690.07580.05780.0953-25.716239.8803-20.7904
27-0.00010.0044-0.0018-0.0014-0.0009-0.00020.00440.0114-0.0122-0.0373-0.0130.01160.0459-0.07160-0.07150.03090.3115-0.00440.13290.041-21.956434.4435-26.2041
280.0007-0.0058-0.00070.001-0.00380.00080.0135-0.01650.00390.07560.05980.00330.02020.00190-0.13250.24770.0434-0.0280.09070.2749-12.519542.6074-17.49
290.0005-0.00070.00130.0002-0.0021-0.00140.0194-0.0257-0.02070.03410.02660.01820.04310.007100.08160.1999-0.22690.10080.1328-0.2564-14.632750.6988-13.5579
30-0.00260.00240.0007-0-0.00460.0062-0.02530.03420.10750.0123-0.0385-0.01730.07850.0536-00.06340.11780.0424-0.2344-0.01860.0211-15.638853.1496-22.7667
310.00020.00040.0001-0.0007-0.0002-0.00070.00760.01580.0032-0.01180.0172-0.0053-0.00880.0317-00.17860.12870.22080.0636-0.0252-0.0552-11.555837.8509-30.1935
32-0.00110.00340.0017-0.00090.0003-0.0010.04690.0156-0.01970.00360.01370.0467-0.00930.000300.13930.02850.00130.0239-0.0470.0664-72.419-6.4687-19.9161
33-0.0010.00460.0029-0.00010.00180.00260.0260.04020.01090.07710.04160.0204-0.0023-0.01530-0.171-0.0653-0.29730.2139-0.1808-0.0318-77.3005-11.7635-32.5729
34-0.00610.00060.00420.00690.002-0.00030.01070.07830.0020.032-0.0219-0.0162-0.0126-0.0213-0-0.2464-0.3058-0.2081-0.1579-0.45830.0643-79.2637-0.3374-31.1476
35-0.01360.00910.0040.00460.002-0.003-0.0266-0.0926-0.077-0.043-0.09510.1549-0.0761-0.0015-00.1126-0.1945-0.18260.046-0.33370.1216-78.26495.1988-23.4285
36-0.01120-0.0154-0.01240.01070.003-0.0596-0.08270.07510.0638-0.08590.099-0.08190.0273-0-0.5379-0.3034-0.6581-0.2019-0.5171-0.6461-75.812612.7379-25.8938
37-0.00750.00690.00310.00210.0055-0.008-0.0246-0.0034-0.02140.07090.10040.0591-0.0317-0.003-0-0.5632-0.5038-0.7368-0.3652-0.5805-0.3908-71.17520.0541-31.6894
380.0006-0.0001-0.00110.0003-0.00070.0009-0.02180.0005-0.0080.0094-0.02770.01070.00450.0024-00.14110.03960.00150.1010.14320.0563-66.462811.2103-17.6994
39-0.00010.00160.0013-0.00080.0016-0.00150.0098-0.0277-0.02820.02060.01620.01830.00280.00460-0.1221-0.1872-0.4824-0.0705-0.2516-0.145-46.6051-31.0806-19.3197
400.00590.0009-0.00570.0026-0.00020.0018-0.0904-0.0411-0.0179-0.0508-0.01160.0568-0.02580.0394-00.0345-0.01110.07180.04030.01840.0146-39.5144-19.6369-25.1396
410.0054-0.00150.0073-0.0005-0.00360.0018-0.0050.04080.0498-0.0298-0.0161-0.0016-0.0513-0.01180-0.1684-0.3252-0.0866-0.06220.01720.0976-51.2768-19.5107-26.8649
420.00180.00520.00170.00170.00430.00180.05540.0088-0.040.03450.0363-0.02460.0210.014400.228-0.14340.01940.2260.040.0885-59.2098-33.6557-22.889
430.0038-0.00580.003-0.002-0.00120.0022-0.09090.00590.07660.01150.05990.03010.00190.0554-0-0.17590.0216-0.48610.05450.0491-0.127-60.672-19.4037-27.8621
440.0066-0.01130.00870.0046-0.00080.00280.0096-0.04920.1743-0.01310.0594-0.0508-0.0105-0.0022-00.21590.0498-0.14320.08020.0774-0.2369-64.2477-22.2612-18.9984
450.0027-0.00020.002-0.00060.00180.0031-0.0184-0.01820.0570.04410.01590.1052-0.00770.0189-00.0129-0.057-0.08660.0878-0.0590.194-49.0014-15.692-18.4946
460.00520.0053-0.00280.00170.0030-0.08080.03350.00210.0164-0.08250.05820.01760.0361-0-0.0122-0.0761-0.031-0.0324-0.2013-0.0005-56.1543-25.129-19.6217
470.00450.00180.00390.00230.00250.0062-0.00780.0095-0.0150.01570.00610-0.0026-0.005100.24330.00270.06080.2916-0.07490.2755-66.1014-29.85-13.0237
480.00130.00340.0058-0.00510.01-0.01150.0695-0.05940.02220.00510.0241-0.0603-0.05780.12470-0.24230.12610.2418-0.5604-0.09540.0105-26.974330.2791-8.7783
490.00010.01920.00060.0179-0.01280.01610.1007-0.01760.0302-0.09910.1740.13520.00260.0608-00.08120.01530.0088-0.0410.0130.1917-29.019226.22096.305
50-0.0025-0.00130.00130.0007-0.00090.0011-0.0187-0.0657-0.05410.0314-0.0155-0.00650.03650.009500.0170.0460.143-0.2221-0.38670.0492-24.697828.314817.2528
51-0.0175-0.010.01470.0028-0.0066-0.0008-0.15540.0555-0.0074-0.1144-0.04660.06840.1335-0.0506-0-0.10680.4250.2534-0.6028-0.37-0.1834-31.548735.9284.4085
52-0.0011-0.0011-0.00010.00190.00120.00060.00530.01170.0297-0.0067-0.03970.0257-0.0013-0.0151-00.1237-0.01010.1021-0.05070.10050.0887-21.6615-42.18-37.8767
530.00280.0035-0.0032-0.00010.0002-0.00140.0357-0.03230.0188-0.01860.0314-0.0173-0.0137-0.063100.1076-0.1387-0.1292-0.1839-0.15930.1775-27.8588-36.4687-25.982
54-0.0112-0.00780.0007-0.00410.0093-0.00530.0444-0.03320.0501-0.0487-0.15020.00970.0033-0.0690-0.39840.40870.2718-0.2715-0.2044-0.06-27.3175-51.8824-31.2775
550.00320.0099-0.0005-0.0050.0095-0.00270.00040.0351-0.0836-0.0860.04020.07660.0261-0.09670-0.5107-0.29930.5133-0.41390.2874-0.133-26.2723-62.5644-32.8263
560.00090.0022-0.00210.0010.0023-0.0007-0.1187-0.03150.02910.037-0.0817-0.0153-0.01470.03030-0.1792-0.27070.0216-0.1109-0.00650.0639-18.1951-53.558-22.9025
570.0068-0.00830.01240.0057-0.01230.00260.0381-0.01530.0657-0.0516-0.029-0.03090.0670.110600.0717-0.0379-0.0122-0.0541-0.03620.0139-18.8445-50.0868-31.803
580.00150.001-0.00060.0013-0.0015-0.00110.0157-0.00060.00430.0078-0.00020.01620.0025-0.0116-00.2260.00040.16170.3011-0.02650.2212-8.50214.3465-29.4047
590.0021-0.0054-0.0010.00240.00020.0012-0.0450.0281-0.09060.05290.05910.0316-0.0048-0.0535-00.0710.0450.02870.0859-0.04350.2773-14.255525.9686-23.2413
600.00740.00020.0010.0019-0.00460.0055-0.0752-0.02920.01040.023-0.0215-0.0263-0.0173-0.0337-00.03840.37780.1588-0.06360.02440.072-2.54325.163-22.307
610.0038-0.0053-0.0063-0.00110.0061-0.00510.03-0.0914-0.05120.04120.02520.0099-0.01420.002600.26270.09580.070.26370.04010.20652.793918.4089-23.887
620.0083-0.0055-0.0172-0.0153-0.00990.0025-0.107-0.07790.050.0659-0.0647-0.05040.0183-0.01480-0.74660.31740.7529-0.0788-0.2549-0.497810.272820.9335-27.2483
63-0.0002-0.0008-0.0021-0.00070.00120.0008-0.0273-0.0186-0.0062-0.0031-0.02680.0148-0.00440.0209-00.03150.11020.26140.161-0.07790.1897-0.430231.5872-30.4524
640.00120.0028-0.00870.0024-0.012-0.0033-0.0291-0.0464-0.0133-0.024-0.07-0.0135-0.01690.01730-0.26830.35410.352-0.36340.12870.1506-4.498123.0315-29.9989
65-0.0010.0009-0.00020.0009-0.00120.0011-0.0095-0.0142-0.01870.0143-0.00750.02620.01890.0258-00.15880.1047-0.01370.03290.07590.03678.559813.4773-37.0969
660.00490.00680.01-0.0055-0.00420.00340.10970.0096-0.0103-0.07360.0929-0.1198-0.03440.07790-0.05520.2041-0.2512-0.61820.4728-0.0811.21224.1554-70.3054
670.01350.00450.0308-0.0026-0.00560.01090.1193-0.0276-0.0473-0.08680.09870.0214-0.0675-0.00530-0.42840.3928-0.6137-0.24820.4382-0.2601-1.226726.0906-74.5314
68-0.001-0.00510.0069-0.00510.0036-0.0038-0.06490.04460.00250.04920.00650.00060.0273-0.01230-0.33930.162-0.3179-0.25730.4095-0.1486-9.883729.0207-77.1724
69-0.00170.00480.00560.0037-0.0091-0.0010.0346-0.03810.0512-0.03730.05910.01150.0160.03360-0.01720.0243-0.0823-0.04330.547-0.0105-15.335324.679-72.6293
70-0.00150.0088-0.0003-0.00510.0031-0.0010.0002-0.14380.23430.06640.01150.0334-0.0781-0.1021-0-0.40580.4318-0.2147-0.1760.219-0.01340.289432.2037-66.5395
710.0033-0.00080.00060.0001-0.00070.00170.01580.0029-0.01540.00840.00740.00460.0036-0.0056-00.3477-0.0129-0.05290.45190.22630.2377-11.743321.8925-61.6337
720.0020.00060.0007-0.00120.00040.00140.0263-0.0266-0.02430.01180.0058-0.00580.004-0.0151-00.5209-0.00230.03980.64180.20750.4063-88.272631.27469.2102
73-0.003-0.0092-0.001-0.0039-0.00830.00230.044-0.0259-0.03450.02710.0006-0.04-0.0019-0.0709-00.2271-0.1398-0.00880.49560.1916-0.0477-76.941124.379815.3928
74-0.0027-0.0077-0.0016-0.00180.00770.00890.0283-0.0133-0.06150.0384-0.0757-0.0599-0.002-0.0387-00.32480.23-0.01240.36320.00960.333-77.646722.84243.9067
750.00180.01-0.00080.00560.00210.00870.12390.01980.0268-0.00210.07220.05710.1334-0.114900.46150.0893-0.02680.14160.0296-0.0707-82.878123.7262-4.8254
760.00020.013-0.0016-0.0096-0.01640.0095-0.0861-0.0193-0.00330.0460.03530.00510.1479-0.0638-00.1818-0.21720.13880.12410.0171-0.4923-81.837331.2476-9.442
77-0.00120.00140.00580.00150.00050.0091-0.055-0.0272-0.0498-0.01480.0505-0.02190.09570.0039-00.40910.1160.03940.36530.04650.0625-78.198832.37491.3734
780.00110.00010.0005-0.0006-0.00130.0017-0.0075-0.00440.0088-0.0099-0.00870.0097-0.0245-0.005700.3557-0.06090.10730.55570.02360.2644-35.847124.1639-59.7706
790.0051-0.0067-0.00060.0141-0.00680.0003-0.05370.09380.1113-0.00830.0448-0.0987-0.06930.0181-00.2701-0.06890.04710.33840.02830.4044-27.876329.3535-57.0098
80-0.00560.0058-0.00090.0053-0.00120.0055-0.04870.01240.0390.0676-0.02850.1-0.04560.0101-00.5854-0.05520.02020.2120.04410.4468-28.432729.5483-41.8879
810.00460.0017-0.0038-0.0026-0.00340.0056-0.1281-0.0023-0.0145-0.0009-0.09490.017-0.01060.0213-00.14220.09220.42880.54390.2008-0.0595-23.861421.2071-51.346
820.001-0.000200.000600.0002-0.00220.00620.00420.01110.0054-0.00470.0008-0.007800.5482-0.0260.01390.5249-0.06460.5132-36.99516.4995-42.7139
830.0007-0.00160.00130.0003-0.00060.0020.02360.0277-0.0025-0.00290.04920.01830.0202-0.004500.13280.08090.0870.2006-0.01760.14-52.666824.354-31.1768
84-0.00050.00040.00080.0002-0.00030.001-0.00680.00650.0339-0.0222-0.0130.00160.02570.0102-00.00920.0702-0.02740.1333-0.07160.0843-21.43753.1676-29.6896
850.00050.0012-0.00070.00240.003-0.00010.02610.0083-0.0191-0.0086-0.0192-0.02280.05660.013900.2495-0.08660.1720.0761-0.3586-0.0232-20.0898-29.555-51.7123
860.0020.00180.00460.0006-0.00260.0010.01350.01920.00220.01220.0336-0.01170.0068-0.0017-00.1209-0.1789-0.11420.00660.20080.1849-31.568848.8292-17.5869
87-0.0026-0.00230.0008-0.00040.0007-0.00040.00470.01490.01350.01150.01890.01790.0037-0.012600.21050.0194-0.05860.1925-0.15690.2135-86.79924.1242-32.0432
88-0.0003-0.0004-0.00050-0.00070.0027-0.0206-0.010.00530.0038-0.0259-0.0072-0.02850.0265-00.1545-0.1810.02140.22650.0831-0.0657-55.1141-19.3411-33.6871
890.00080.0016-0.00090.00110.0010.0042-0.00890.00490.009-0.03210.00830.0048-0.0141-0.001-00.1792-0.0047-0.0320.18210.05950.1477-32.777819.17773.0155
900.0015-0.0021-0.0008-0.0003-0-0.0001-0.0447-0.046-0.018-0.0102-0.03090.04750.0006-0.021300.1122-0.08140.09890.12270.02230.0952-35.818-53.3631-26.1159
91-0.0005-0.0002-0.00110.00090.00040.00230.0218-0.00480.0023-0.01040.03120.0026-0.00060.0177-00.53650.05360.12460.5295-0.00290.39750.312323.911-15.3528
920.00150.00140.0005-0.00020.00050.0008-0.02040.00380.0187-0.0349-0.00520.047-0.02690.0108-00.1075-0.0798-0.19810.1635-0.02950.16180.149229.5742-82.5842
93-0.00020.00090.00020.0007-0.00090.0003-0.01240.0079-0.00230.0078-0.0025-0.00410.00360.0054-00.5146-0.03130.05250.4543-0.05010.4748-25.938537.595-52.5642
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 1 through 10 )
2X-RAY DIFFRACTION2chain 'A' and (resid 11 through 24 )
3X-RAY DIFFRACTION3chain 'A' and (resid 25 through 110 )
4X-RAY DIFFRACTION4chain 'A' and (resid 111 through 116 )
5X-RAY DIFFRACTION5chain 'B' and (resid 1 through 10 )
6X-RAY DIFFRACTION6chain 'B' and (resid 11 through 24 )
7X-RAY DIFFRACTION7chain 'B' and (resid 25 through 35 )
8X-RAY DIFFRACTION8chain 'B' and (resid 36 through 56 )
9X-RAY DIFFRACTION9chain 'B' and (resid 57 through 68 )
10X-RAY DIFFRACTION10chain 'B' and (resid 69 through 90 )
11X-RAY DIFFRACTION11chain 'B' and (resid 91 through 98 )
12X-RAY DIFFRACTION12chain 'B' and (resid 99 through 110 )
13X-RAY DIFFRACTION13chain 'B' and (resid 111 through 116 )
14X-RAY DIFFRACTION14chain 'C' and (resid 1 through 10 )
15X-RAY DIFFRACTION15chain 'C' and (resid 11 through 24 )
16X-RAY DIFFRACTION16chain 'C' and (resid 25 through 56 )
17X-RAY DIFFRACTION17chain 'C' and (resid 57 through 79 )
18X-RAY DIFFRACTION18chain 'C' and (resid 80 through 98 )
19X-RAY DIFFRACTION19chain 'C' and (resid 99 through 110 )
20X-RAY DIFFRACTION20chain 'C' and (resid 111 through 116 )
21X-RAY DIFFRACTION21chain 'D' and (resid 1 through 10 )
22X-RAY DIFFRACTION22chain 'D' and (resid 11 through 24 )
23X-RAY DIFFRACTION23chain 'D' and (resid 25 through 35 )
24X-RAY DIFFRACTION24chain 'D' and (resid 36 through 47 )
25X-RAY DIFFRACTION25chain 'D' and (resid 48 through 56 )
26X-RAY DIFFRACTION26chain 'D' and (resid 57 through 68 )
27X-RAY DIFFRACTION27chain 'D' and (resid 69 through 79 )
28X-RAY DIFFRACTION28chain 'D' and (resid 80 through 90 )
29X-RAY DIFFRACTION29chain 'D' and (resid 91 through 98 )
30X-RAY DIFFRACTION30chain 'D' and (resid 99 through 110 )
31X-RAY DIFFRACTION31chain 'D' and (resid 111 through 116 )
32X-RAY DIFFRACTION32chain 'E' and (resid 1 through 10 )
33X-RAY DIFFRACTION33chain 'E' and (resid 11 through 24 )
34X-RAY DIFFRACTION34chain 'E' and (resid 25 through 35 )
35X-RAY DIFFRACTION35chain 'E' and (resid 36 through 56 )
36X-RAY DIFFRACTION36chain 'E' and (resid 57 through 90 )
37X-RAY DIFFRACTION37chain 'E' and (resid 91 through 110 )
38X-RAY DIFFRACTION38chain 'E' and (resid 111 through 116 )
39X-RAY DIFFRACTION39chain 'F' and (resid 1 through 10 )
40X-RAY DIFFRACTION40chain 'F' and (resid 11 through 24 )
41X-RAY DIFFRACTION41chain 'F' and (resid 25 through 35 )
42X-RAY DIFFRACTION42chain 'F' and (resid 36 through 47 )
43X-RAY DIFFRACTION43chain 'F' and (resid 48 through 68 )
44X-RAY DIFFRACTION44chain 'F' and (resid 69 through 90 )
45X-RAY DIFFRACTION45chain 'F' and (resid 91 through 104 )
46X-RAY DIFFRACTION46chain 'F' and (resid 105 through 110 )
47X-RAY DIFFRACTION47chain 'F' and (resid 111 through 115 )
48X-RAY DIFFRACTION48chain 'G' and (resid 1 through 24 )
49X-RAY DIFFRACTION49chain 'G' and (resid 25 through 67 )
50X-RAY DIFFRACTION50chain 'G' and (resid 68 through 79 )
51X-RAY DIFFRACTION51chain 'G' and (resid 80 through 116 )
52X-RAY DIFFRACTION52chain 'H' and (resid 1 through 10 )
53X-RAY DIFFRACTION53chain 'H' and (resid 11 through 24 )
54X-RAY DIFFRACTION54chain 'H' and (resid 25 through 56 )
55X-RAY DIFFRACTION55chain 'H' and (resid 57 through 79 )
56X-RAY DIFFRACTION56chain 'H' and (resid 80 through 98 )
57X-RAY DIFFRACTION57chain 'H' and (resid 99 through 116 )
58X-RAY DIFFRACTION58chain 'I' and (resid 1 through 10 )
59X-RAY DIFFRACTION59chain 'I' and (resid 11 through 24 )
60X-RAY DIFFRACTION60chain 'I' and (resid 25 through 35 )
61X-RAY DIFFRACTION61chain 'I' and (resid 36 through 56 )
62X-RAY DIFFRACTION62chain 'I' and (resid 57 through 90 )
63X-RAY DIFFRACTION63chain 'I' and (resid 91 through 98 )
64X-RAY DIFFRACTION64chain 'I' and (resid 99 through 110 )
65X-RAY DIFFRACTION65chain 'I' and (resid 111 through 116 )
66X-RAY DIFFRACTION66chain 'J' and (resid 1 through 24 )
67X-RAY DIFFRACTION67chain 'J' and (resid 25 through 56 )
68X-RAY DIFFRACTION68chain 'J' and (resid 57 through 68 )
69X-RAY DIFFRACTION69chain 'J' and (resid 69 through 79 )
70X-RAY DIFFRACTION70chain 'J' and (resid 80 through 110 )
71X-RAY DIFFRACTION71chain 'J' and (resid 111 through 116 )
72X-RAY DIFFRACTION72chain 'K' and (resid 1 through 10 )
73X-RAY DIFFRACTION73chain 'K' and (resid 11 through 24 )
74X-RAY DIFFRACTION74chain 'K' and (resid 25 through 35 )
75X-RAY DIFFRACTION75chain 'K' and (resid 36 through 68 )
76X-RAY DIFFRACTION76chain 'K' and (resid 69 through 90 )
77X-RAY DIFFRACTION77chain 'K' and (resid 91 through 116 )
78X-RAY DIFFRACTION78chain 'L' and (resid 1 through 10 )
79X-RAY DIFFRACTION79chain 'L' and (resid 11 through 47 )
80X-RAY DIFFRACTION80chain 'L' and (resid 48 through 79 )
81X-RAY DIFFRACTION81chain 'L' and (resid 80 through 110 )
82X-RAY DIFFRACTION82chain 'L' and (resid 111 through 116 )
83X-RAY DIFFRACTION83chain 'M' and (resid 273 through 278 )
84X-RAY DIFFRACTION84chain 'N' and (resid 273 through 278 )
85X-RAY DIFFRACTION85chain 'O' and (resid 273 through 279 )
86X-RAY DIFFRACTION86chain 'P' and (resid 273 through 279 )
87X-RAY DIFFRACTION87chain 'Q' and (resid 273 through 279 )
88X-RAY DIFFRACTION88chain 'R' and (resid 273 through 278 )
89X-RAY DIFFRACTION89chain 'S' and (resid 273 through 278 )
90X-RAY DIFFRACTION90chain 'T' and (resid 273 through 279 )
91X-RAY DIFFRACTION91chain 'U' and (resid 273 through 277 )
92X-RAY DIFFRACTION92chain 'V' and (resid 273 through 278 )
93X-RAY DIFFRACTION93chain 'X' and (resid 273 through 276 )

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