- PDB-7v7c: CryoEM structure of DDB1-VprBP-Vpr-UNG2(94-313) complex -
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基本情報
登録情報
データベース: PDB / ID: 7v7c
タイトル
CryoEM structure of DDB1-VprBP-Vpr-UNG2(94-313) complex
要素
DDB1- and CUL4-associated factor 1
DNA damage-binding protein 1
Protein Vpr
Uracil-DNA glycosylase
キーワード
TRANSFERASE/DNA BINDING PROTEIN/VIRAL PROTEIN / E3 ligase (ユビキチンリガーゼ) / HIV accessory protein / restriction factors / LIGASE (リガーゼ) / TRANSFERASE-DNA BINDING PROTEIN-VIRAL PROTEIN complex
機能・相同性
機能・相同性情報
histone H2AT120 kinase activity / cell competition in a multicellular organism / symbiont-mediated arrest of host cell cycle during G2/M transition / base-excision repair, AP site formation via deaminated base removal / uracil-DNA glycosylase / depyrimidination / Displacement of DNA glycosylase by APEX1 / positive regulation by virus of viral protein levels in host cell / V(D)J遺伝子再構成 / epigenetic programming in the zygotic pronuclei ...histone H2AT120 kinase activity / cell competition in a multicellular organism / symbiont-mediated arrest of host cell cycle during G2/M transition / base-excision repair, AP site formation via deaminated base removal / uracil-DNA glycosylase / depyrimidination / Displacement of DNA glycosylase by APEX1 / positive regulation by virus of viral protein levels in host cell / V(D)J遺伝子再構成 / epigenetic programming in the zygotic pronuclei / クラススイッチ / spindle assembly involved in female meiosis / Cul4-RING E3 ubiquitin ligase complex / UV-damage excision repair / uracil DNA N-glycosylase activity / biological process involved in interaction with symbiont / WD40-repeat domain binding / regulation of mitotic cell cycle phase transition / Cul4A-RING E3 ubiquitin ligase complex / Cul4B-RING E3 ubiquitin ligase complex / ubiquitin ligase complex scaffold activity / negative regulation of reproductive process / negative regulation of developmental process / cullin family protein binding / ribosomal small subunit binding / ubiquitin-like ligase-substrate adaptor activity / viral release from host cell / ectopic germ cell programmed cell death / somatic hypermutation of immunoglobulin genes / positive regulation of viral genome replication / monoatomic ion transport / positive regulation of gluconeogenesis / Recognition and association of DNA glycosylase with site containing an affected pyrimidine / Cleavage of the damaged pyrimidine / : / B cell differentiation / proteasomal protein catabolic process / post-translational protein modification / Chromatin modifications during the maternal to zygotic transition (MZT) / virion component / nuclear estrogen receptor binding / nucleotide-excision repair / Recognition of DNA damage by PCNA-containing replication complex / DNA Damage Recognition in GG-NER / 塩基除去修復 / protein homooligomerization / regulation of circadian rhythm / Dual Incision in GG-NER / Transcription-Coupled Nucleotide Excision Repair (TC-NER) / Formation of TC-NER Pre-Incision Complex / 核小体 / Wntシグナル経路 / Formation of Incision Complex in GG-NER / Dual incision in TC-NER / Gap-filling DNA repair synthesis and ligation in TC-NER / viral penetration into host nucleus / positive regulation of protein catabolic process / cellular response to UV / rhythmic process / Antigen processing: Ubiquitination & Proteasome degradation / protein-macromolecule adaptor activity / site of double-strand break / Neddylation / ubiquitin-dependent protein catabolic process / proteasome-mediated ubiquitin-dependent protein catabolic process / host extracellular space / damaged DNA binding / chromosome, telomeric region / non-specific serine/threonine protein kinase / protein ubiquitination / symbiont entry into host cell / 細胞周期 / リン酸化 / protein serine kinase activity / DNA修復 / DNA-templated transcription / apoptotic process / DNA damage response / host cell nucleus / protein-containing complex binding / regulation of DNA-templated transcription / 核小体 / negative regulation of apoptotic process / negative regulation of transcription by RNA polymerase II / protein-containing complex / ミトコンドリア / DNA binding / extracellular space / extracellular exosome / 核質 / ATP binding / 細胞核 / 細胞質 類似検索 - 分子機能
Retroviral VpR/VpX protein / VPR/VPX protein / VPRBP/DCAF1 family / Uracil-DNA glycosylase family 1 / Lissencephaly type-1-like homology motif / UreE urease accessory protein, C-terminal domain / Uracil DNA glycosylase superfamily / Uracil-DNA glycosylase, active site / Uracil-DNA glycosylase signature. / Uracil-DNA glycosylase-like ...Retroviral VpR/VpX protein / VPR/VPX protein / VPRBP/DCAF1 family / Uracil-DNA glycosylase family 1 / Lissencephaly type-1-like homology motif / UreE urease accessory protein, C-terminal domain / Uracil DNA glycosylase superfamily / Uracil-DNA glycosylase, active site / Uracil-DNA glycosylase signature. / Uracil-DNA glycosylase-like / Uracil DNA glycosylase superfamily / LIS1 homology (LisH) motif profile. / LIS1 homology motif / Uracil-DNA glycosylase-like domain superfamily / Cleavage/polyadenylation specificity factor, A subunit, N-terminal / Mono-functional DNA-alkylating methyl methanesulfonate N-term / Cleavage/polyadenylation specificity factor, A subunit, C-terminal / CPSF A subunit region / Armadillo-like helical / Armadillo-type fold / WD40-repeat-containing domain superfamily / WD40/YVTN repeat-like-containing domain superfamily 類似検索 - ドメイン・相同性
Protein Vpr / Uracil-DNA glycosylase / DNA damage-binding protein 1 / DDB1- and CUL4-associated factor 1 類似検索 - 構成要素
生物種
Homo sapiens (ヒト) Human immunodeficiency virus 1 (ヒト免疫不全ウイルス)
#241 - 2020年1月 20年の分子を振り返って (Twenty Years of Molecules) 類似性 (2)
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集合体
登録構造単位
A: DDB1- and CUL4-associated factor 1 B: DNA damage-binding protein 1 C: Protein Vpr D: Uracil-DNA glycosylase E: DDB1- and CUL4-associated factor 1 F: DNA damage-binding protein 1 G: Protein Vpr H: Uracil-DNA glycosylase