+Open data
-Basic information
Entry | Database: PDB / ID: 7quu | ||||||||||||
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Title | Red1-Iss10 complex | ||||||||||||
Components |
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Keywords | RNA / MTREC complex / RNA degradation / meiosis | ||||||||||||
Function / homology | Function and homology information MTREC complex / nucleolar peripheral inclusion body / cleavage body / sno(s)RNA processing / regulation of siRNA-mediated facultative heterochromatin formation / siRNA-independent facultative heterochromatin formation / regulation of siRNA-independent facultative heterochromatin formation / nuclear exosome focus / nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts / Mei2 nuclear dot complex ...MTREC complex / nucleolar peripheral inclusion body / cleavage body / sno(s)RNA processing / regulation of siRNA-mediated facultative heterochromatin formation / siRNA-independent facultative heterochromatin formation / regulation of siRNA-independent facultative heterochromatin formation / nuclear exosome focus / nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts / Mei2 nuclear dot complex / heterochromatin island / exosome (RNase complex) / protein-macromolecule adaptor activity / nuclear body / chromatin / metal ion binding / nucleus Similarity search - Function | ||||||||||||
Biological species | Schizosaccharomyces pombe (fission yeast) | ||||||||||||
Method | SOLUTION NMR / simulated annealing | ||||||||||||
Authors | Mackereth, C.D. / Kadlec, J. / Laroussi, H. | ||||||||||||
Funding support | France, 3items
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Citation | Journal: Nat Commun / Year: 2022 Title: Structural analysis of Red1 as a conserved scaffold of the RNA-targeting MTREC/PAXT complex. Authors: Foucher, A.E. / Touat-Todeschini, L. / Juarez-Martinez, A.B. / Rakitch, A. / Laroussi, H. / Karczewski, C. / Acajjaoui, S. / Soler-Lopez, M. / Cusack, S. / Mackereth, C.D. / Verdel, A. / Kadlec, J. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 7quu.cif.gz | 636.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb7quu.ent.gz | 546.3 KB | Display | PDB format |
PDBx/mmJSON format | 7quu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qu/7quu ftp://data.pdbj.org/pub/pdb/validation_reports/qu/7quu | HTTPS FTP |
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-Related structure data
Related structure data | 7qy5C C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 6592.497 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Schizosaccharomyces pombe (fission yeast) Strain: 972 / ATCC 24843 / Gene: SPAC7D4.14c / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: O14269 |
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#2: Protein/peptide | Mass: 5299.981 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Schizosaccharomyces pombe (fission yeast) Strain: 972 / ATCC 24843 / Gene: red1, iss3, SPAC1006.03c / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: Q9UTR8 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 150 mM / Label: conditions_1 / pH: 7.5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 4 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |