Entry Database : PDB / ID : 7p8o Structure visualization Downloads & linksTitle Crystal structure of D-aminoacid transaminase from Haliscomenobacter hydrossis in its intermediate form ComponentsAminotransferase class IV Details Keywords TRANSFERASE / Transaminase / DATA / aminotransferase / apoFunction / homology Function and homology informationFunction Domain/homology Component
aspartate biosynthetic process / branched-chain-amino-acid transaminase activity / L-leucine biosynthetic process / valine biosynthetic process / metal ion binding / cytosol Similarity search - Function Aminotransferase class IV / Aminotransferase-like, PLP-dependent enzymes / Branched-chain-amino-acid aminotransferase-like, N-terminal / Branched-chain-amino-acid aminotransferase-like, C-terminal / Amino-transferase class IV Similarity search - Domain/homologyBiological species Haliscomenobacter hydrossis DSM 1100 (bacteria)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution : 1.95 Å DetailsAuthors Matyuta, I.O. / Boyko, K.M. / Bakunova, A.K. / Nikolaeva, A.Y. / Rakitina, T.V. / Bezsudnova, E.Y. / Popov, V.O. Funding support Russian Federation, 1items Details Hide detailsOrganization Grant number Country Russian Science Foundation 19-14-00164 Russian Federation
CitationJournal : To Be Published Title : Crystal structure of D-aminoacid transaminase from Haliscomenobacter hydrossis in its apo formAuthors : Matyuta, I.O. / Boyko, K.M. / Bakunova, A.K. / Nikolaeva, A.Y. / Rakitina, T.V. / Bezsudnova, E.Y. / Popov, V.O. History Deposition Jul 23, 2021 Deposition site : PDBE / Processing site : PDBERevision 1.0 Aug 3, 2022 - Revision 1.1 Jan 31, 2024 - Revision 2.0 Jul 3, 2024 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Derived calculations / Refinement description / Source and taxonomy / Structure summary Category : atom_site / entity_src_gen ... atom_site / entity_src_gen / pdbx_contact_author / pdbx_nonpoly_scheme / pdbx_struct_assembly / pdbx_struct_assembly_prop / pdbx_struct_sheet_hbond / pdbx_unobs_or_zero_occ_atoms / pdbx_unobs_or_zero_occ_residues / pdbx_validate_rmsd_angle / pdbx_validate_torsion / refine / refine_hist / refine_ls_restr / refine_ls_shell / reflns / reflns_shell / struct_conn / struct_sheet_range Item : _entity_src_gen.pdbx_gene_src_scientific_name / _pdbx_nonpoly_scheme.auth_seq_num ... _entity_src_gen.pdbx_gene_src_scientific_name / _pdbx_nonpoly_scheme.auth_seq_num / _pdbx_struct_assembly.details / _pdbx_struct_assembly.method_details / _pdbx_struct_assembly_prop.value / _pdbx_struct_sheet_hbond.range_1_auth_comp_id / _pdbx_struct_sheet_hbond.range_1_auth_seq_id / _pdbx_struct_sheet_hbond.range_1_label_comp_id / _pdbx_struct_sheet_hbond.range_1_label_seq_id / _pdbx_struct_sheet_hbond.range_2_auth_comp_id / _pdbx_struct_sheet_hbond.range_2_auth_seq_id / _pdbx_struct_sheet_hbond.range_2_label_comp_id / _pdbx_struct_sheet_hbond.range_2_label_seq_id / _refine.B_iso_max / _refine.B_iso_mean / _refine.B_iso_min / _refine.aniso_B[1][3] / _refine.aniso_B[2][2] / _refine.correlation_coeff_Fo_to_Fc / _refine.correlation_coeff_Fo_to_Fc_free / _refine.details / _refine.ls_R_factor_R_free / _refine.ls_R_factor_R_work / _refine.ls_R_factor_obs / _refine.ls_wR_factor_R_free / _refine.ls_wR_factor_R_work / _refine.overall_FOM_work_R_set / _refine.overall_SU_B / _refine.overall_SU_ML / _refine.overall_SU_R_Cruickshank_DPI / _refine.overall_SU_R_free / _refine.pdbx_ls_sigma_F / _refine.pdbx_overall_ESU_R / _refine.pdbx_overall_ESU_R_Free / _refine_hist.cycle_id / _refine_hist.number_atoms_total / _refine_hist.pdbx_B_iso_mean_ligand / _refine_hist.pdbx_B_iso_mean_solvent / _refine_hist.pdbx_number_atoms_protein / _refine_hist.pdbx_number_residues_total / _refine_ls_shell.R_factor_R_free / _refine_ls_shell.R_factor_R_free_error / _refine_ls_shell.R_factor_R_work / _refine_ls_shell.number_reflns_all / _reflns.pdbx_chi_squared / _reflns.pdbx_scaling_rejects / _struct_conn.pdbx_dist_value / _struct_sheet_range.beg_auth_comp_id / _struct_sheet_range.beg_auth_seq_id / _struct_sheet_range.beg_label_comp_id / _struct_sheet_range.beg_label_seq_id Description : Atoms with unrealistic or zero occupancies / Provider : author / Type : Coordinate replacement
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