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Open data
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Basic information
Entry | Database: PDB / ID: 7p23 | ||||||
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Title | Thaumatin-like protein of Puccinia graminis | ||||||
![]() | Thaumatin-like protein of Puccinia graminis | ||||||
![]() | UNKNOWN FUNCTION / Thaumatin-like protein | ||||||
Function / homology | Thaumatin family / Thaumatin family / Thaumatin family profile. / Thaumatin family / Osmotin/thaumatin-like superfamily / defense response / Uncharacterized protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Eder, M. / Hofer, G. / Odabas, M. / Keller, W. | ||||||
Funding support | ![]()
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![]() | ![]() Title: The structure of Thaumatin-like proteins of a bacterial, a fungal and an animal origin Authors: Eder, M. / Hofer, G. / Odabas, M. / Keller, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 221.3 KB | Display | ![]() |
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PDB format | ![]() | 177.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 420.8 KB | Display | ![]() |
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Full document | ![]() | 420.9 KB | Display | |
Data in XML | ![]() | 24.2 KB | Display | |
Data in CIF | ![]() | 37.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7p22C ![]() 2ahnS S: Starting model for refinement C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 26004.887 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: CRL 75-36-700-3 / race SCCL / Gene: PGTG_18309 / Plasmid: pPpT4-alpha / Production host: ![]() #2: Chemical | ChemComp-NA / | #3: Water | ChemComp-HOH / | Has ligand of interest | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.37 Å3/Da / Density % sol: 48.03 % |
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Crystal grow | Temperature: 293 K / Method: microbatch / pH: 4.5 Details: PACT premier F12 (0.2 M Sodium nitrate, 0.1 M Bis-Tris propane pH 6.5, and 20 % w/v PEG 3350) |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Apr 23, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.0332 Å / Relative weight: 1 |
Reflection | Resolution: 1.5→42.2 Å / Num. obs: 79992 / % possible obs: 99.96 % / Redundancy: 12.9 % / CC1/2: 0.995 / Rmerge(I) obs: 0.1396 / Rpim(I) all: 0.04067 / Rrim(I) all: 0.1456 / Net I/σ(I): 10.34 |
Reflection shell | Resolution: 1.5→1.554 Å / Redundancy: 13.1 % / Rmerge(I) obs: 1.298 / Mean I/σ(I) obs: 1.41 / Num. unique obs: 7882 / CC1/2: 0.703 / Rpim(I) all: 0.3669 / % possible all: 99.84 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2ahn Resolution: 1.5→42.2 Å / SU ML: 0.16 / Cross valid method: THROUGHOUT / σ(F): 1.34 / Phase error: 18.98 / Stereochemistry target values: ML
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 76.13 Å2 / Biso mean: 26.2133 Å2 / Biso min: 12.19 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 1.5→42.2 Å
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0 / Total num. of bins used: 8
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