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Yorodumi- PDB-7npa: Crystal structure of the Coenzyme F420-dependent sulfite reductas... -
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Basic information
| Entry | Database: PDB / ID: 7npa | |||||||||
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| Title | Crystal structure of the Coenzyme F420-dependent sulfite reductase from Methanothermococcus thermolithotrophicus at 1.55-A resolution | |||||||||
Components | Coenzyme F420-dependent sulfite reductase | |||||||||
Keywords | OXIDOREDUCTASE / Sulfite detoxification / Sulfur metabolism / sulfide / hydrogenotrophic methanogens / iron-sulfur cluster / sulfite-reductase evolution / sulfite/nitrite reductase / siroheme / flavin / ferredoxin / F420 / thermophile | |||||||||
| Function / homology | Function and homology information4 iron, 4 sulfur cluster binding / oxidoreductase activity / nucleotide binding / heme binding / metal ion binding Similarity search - Function | |||||||||
| Biological species | Methanothermococcus thermolithotrophicus DSM 2095 (archaea) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.55 Å | |||||||||
Authors | Jespersen, M. / Wagner, T. | |||||||||
| Funding support | Germany, 2items
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Citation | Journal: Nat.Chem.Biol. / Year: 2023Title: Structures of the sulfite detoxifying F 420 -dependent enzyme from Methanococcales. Authors: Jespersen, M. / Pierik, A.J. / Wagner, T. #1: Journal: Biorxiv / Year: 2022Title: The structure of the F420-dependent sulfite-detoxifying enzyme from Methanococcales reveals a prototypical sulfite-reductase with assimilatory traits Authors: Jespersen, M. / Pierik, A.J. / Wagner, T. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 7npa.cif.gz | 4.2 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb7npa.ent.gz | 3.5 MB | Display | PDB format |
| PDBx/mmJSON format | 7npa.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 7npa_validation.pdf.gz | 90.3 MB | Display | wwPDB validaton report |
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| Full document | 7npa_full_validation.pdf.gz | 90.9 MB | Display | |
| Data in XML | 7npa_validation.xml.gz | 465.3 KB | Display | |
| Data in CIF | 7npa_validation.cif.gz | 689.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/np/7npa ftp://data.pdbj.org/pub/pdb/validation_reports/np/7npa | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 7np8SC S: Starting model for refinement C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
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About Yorodumi



Methanothermococcus thermolithotrophicus DSM 2095 (archaea)
X-RAY DIFFRACTION
Germany, 2items
Citation
PDBj












