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Open data
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Basic information
Entry | Database: PDB / ID: 7lq2 | ||||||
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Title | Apo Rr RsiG- crystal form 1 | ||||||
![]() | RR RsiG | ||||||
![]() | TRANSCRIPTION / RsiG / single-motif / WhiG / evolution / homodimer / Rubrobacter radiotolerans | ||||||
Function / homology | nucleotide binding / metal ion binding / ISOPROPYL ALCOHOL / Uncharacterized protein![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Schumacher, M.A. / Brennan, R.G. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Evolution of a sigma-(c-di-GMP)-anti-sigma switch. Authors: Schumacher, M.A. / Gallagher, K.A. / Holmes, N.A. / Chandra, G. / Henderson, M. / Kysela, D.T. / Brennan, R.G. / Buttner, M.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 195.5 KB | Display | ![]() |
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PDB format | ![]() | 165.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 23.5 KB | Display | |
Data in CIF | ![]() | 34.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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3 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 9679.238 Da / Num. of mol.: 6 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | #3: Chemical | #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.89 Å3/Da / Density % sol: 57.38 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / Details: 12% isopropanol, 0.1 M HEPES pH 7.5, 0.1 M MgCl2 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Jun 27, 2020 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.979 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→50.46 Å / Num. obs: 57371 / % possible obs: 99.6 % / Redundancy: 6.6 % / CC1/2: 0.998 / Rpim(I) all: 0.032 / Rsym value: 0.053 / Net I/σ(I): 17.8 |
Reflection shell | Resolution: 1.85→1.92 Å / Mean I/σ(I) obs: 2.4 / Num. unique obs: 5313 / CC1/2: 0.898 / Rpim(I) all: 0.374 / Rsym value: 0.464 |
-Phasing
Phasing | Method: ![]() |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso max: 123.01 Å2 / Biso mean: 28.1805 Å2 / Biso min: 10.33 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: final / Resolution: 1.85→50.457 Å
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LS refinement shell | Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0
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Refinement TLS params. | Method: refined / Origin x: 44.5479 Å / Origin y: 22.0469 Å / Origin z: 66.4727 Å
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Refinement TLS group |
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