- PDB-7fgn: The crystal structure of the FAF1 UBL1 -
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Basic information
Entry
Database: PDB / ID: 7fgn
Title
The crystal structure of the FAF1 UBL1
Components
FAS-associated factor 1
Keywords
CHAPERONE
Function / homology
Function and homology information
ooplasm / positive regulation of extrinsic apoptotic signaling pathway via death domain receptors / CD95 death-inducing signaling complex / cytoplasmic sequestering of NF-kappaB / VCP-NPL4-UFD1 AAA ATPase complex / protein kinase regulator activity / regulation of protein catabolic process / NF-kappaB binding / regulation of cell adhesion / ERAD pathway ...ooplasm / positive regulation of extrinsic apoptotic signaling pathway via death domain receptors / CD95 death-inducing signaling complex / cytoplasmic sequestering of NF-kappaB / VCP-NPL4-UFD1 AAA ATPase complex / protein kinase regulator activity / regulation of protein catabolic process / NF-kappaB binding / regulation of cell adhesion / ERAD pathway / heat shock protein binding / ubiquitin binding / positive regulation of DNA replication / positive regulation of protein-containing complex assembly / positive regulation of protein catabolic process / nuclear envelope / proteasome-mediated ubiquitin-dependent protein catabolic process / positive regulation of apoptotic process / protein domain specific binding / ubiquitin protein ligase binding / apoptotic process / protein kinase binding / perinuclear region of cytoplasm / endoplasmic reticulum / nucleoplasm / nucleus / cytosol Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1 Å / Relative weight: 1
Reflection
Resolution: 1.199→50 Å / Num. obs: 23078 / % possible obs: 99.7 % / Redundancy: 12.2 % / Rmerge(I) obs: 0.05 / Χ2: 0.951 / Net I/σ(I): 19.9
Reflection shell
Resolution (Å)
Redundancy (%)
Rmerge(I) obs
Num. unique obs
Χ2
Diffraction-ID
% possible all
1.2-1.24
9.3
0.216
2256
0.567
1
99.6
1.24-1.29
9.8
0.179
2261
0.594
1
99.9
1.29-1.35
10.4
0.157
2263
0.634
1
99.8
1.35-1.42
11.2
0.122
2259
0.665
1
99.6
1.42-1.51
12
0.096
2291
0.733
1
99.9
1.51-1.63
13
0.078
2293
0.827
1
99.7
1.63-1.79
13.6
0.064
2295
0.967
1
100
1.79-2.05
14.2
0.054
2314
1.256
1
99.9
2.05-2.59
14.6
0.047
2374
1.377
1
99.9
2.59-10
13.6
0.041
2472
1.362
1
98.6
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Processing
Software
Name
Version
Classification
HKL-2000
datascaling
PHENIX
1.16_3549
refinement
PDB_EXTRACT
3.27
dataextraction
HKL-2000
datareduction
CNS
phasing
Refinement
Method to determine structure: SAD / Resolution: 1.199→29.825 Å / SU ML: 0.12 / Cross valid method: THROUGHOUT / σ(F): 1.51 / Phase error: 23.04 / Stereochemistry target values: ML
Rfactor
Num. reflection
% reflection
Rfree
0.2455
1184
5.14 %
Rwork
0.2221
21868
-
obs
0.2232
23052
99.62 %
Solvent computation
Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
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