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Open data
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Basic information
Entry | Database: PDB / ID: 7f8f | ||||||||||||
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Title | Roadblock from Odinarchaeota LCB_4 | ||||||||||||
![]() | Robl_LC7 domain-containing protein | ||||||||||||
![]() | UNKNOWN FUNCTION / Asgard archaea / MGLB / roadblock | ||||||||||||
Function / homology | Roadblock/LAMTOR2 domain / Roadblock/LC7 domain / Roadblock/LC7 domain / Robl_LC7 domain-containing protein![]() | ||||||||||||
Biological species | ![]() | ||||||||||||
Method | ![]() ![]() ![]() | ||||||||||||
![]() | Robinson, R.C. / Akil, C. | ||||||||||||
Funding support | ![]() ![]()
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![]() | ![]() Title: Roadblock from Odinarchaeota LCB_4 Authors: Akil, C. / Robinson, R.C. | ||||||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 48.6 KB | Display | ![]() |
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PDB format | ![]() | 31.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 417.3 KB | Display | ![]() |
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Full document | ![]() | 417.2 KB | Display | |
Data in XML | ![]() | 5.7 KB | Display | |
Data in CIF | ![]() | 6.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3l7hS S: Starting model for refinement |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 10438.052 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: LCB_4 / Gene: OdinLCB4_13320 / Production host: ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.21 Å3/Da / Density % sol: 44.41 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion / Details: 200 mM MgSO4 20% PEG 4000 10% glycerol |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX-300 / Detector: CCD / Date: Oct 10, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.83→42.1 Å / Num. obs: 8418 / % possible obs: 99.8 % / Redundancy: 7.1 % / Rmerge(I) obs: 0.046 / Rpim(I) all: 0.019 / Rrim(I) all: 0.05 / Net I/σ(I): 18.5 |
Reflection shell | Resolution: 1.83→1.87 Å / Rmerge(I) obs: 0.524 / Mean I/σ(I) obs: 2.6 / Num. unique obs: 813 / CC1/2: 0.889 / Rpim(I) all: 0.211 / Rrim(I) all: 0.566 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 3l7h Resolution: 1.83→39.3 Å / Cross valid method: FREE R-VALUE Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Displacement parameters | Biso mean: 32.34 Å2 | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.83→39.3 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.83→2.1 Å
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