[English] 日本語
Yorodumi
- PDB-7ezj: Crystal structure of p73 DNA binding domain complex bound with 1 ... -

+
Open data


ID or keywords:

Loading...

-
Basic information

Entry
Database: PDB / ID: 7ezj
TitleCrystal structure of p73 DNA binding domain complex bound with 1 bp and 2 bp spacer DNA response elements.
Components
  • 12-mer DNA
  • Tumor protein p73
KeywordsDNA BINDING PROTEIN/DNA / DNA BINDING PROTEIN / DNA BINDING PROTEIN-DNA complex
Function / homology
Function and homology information


positive regulation of lung ciliated cell differentiation / negative regulation of cardiac muscle cell proliferation / TP53 Regulates Transcription of Death Receptors and Ligands / Activation of PUMA and translocation to mitochondria / Regulation of TP53 Activity through Association with Co-factors / positive regulation of oligodendrocyte differentiation / TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain / TP53 Regulates Transcription of Caspase Activators and Caspases / TP53 Regulates Transcription of Genes Involved in Cytochrome C Release / negative regulation of neuron differentiation ...positive regulation of lung ciliated cell differentiation / negative regulation of cardiac muscle cell proliferation / TP53 Regulates Transcription of Death Receptors and Ligands / Activation of PUMA and translocation to mitochondria / Regulation of TP53 Activity through Association with Co-factors / positive regulation of oligodendrocyte differentiation / TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain / TP53 Regulates Transcription of Caspase Activators and Caspases / TP53 Regulates Transcription of Genes Involved in Cytochrome C Release / negative regulation of neuron differentiation / intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator / mismatch repair / MDM2/MDM4 family protein binding / : / regulation of mitotic cell cycle / transcription corepressor binding / kidney development / protein tetramerization / intrinsic apoptotic signaling pathway in response to DNA damage / p53 binding / cell junction / RUNX1 regulates transcription of genes involved in differentiation of HSCs / regulation of gene expression / DNA-binding transcription activator activity, RNA polymerase II-specific / DNA-binding transcription factor binding / RNA polymerase II-specific DNA-binding transcription factor binding / positive regulation of MAPK cascade / regulation of cell cycle / DNA-binding transcription factor activity, RNA polymerase II-specific / transcription cis-regulatory region binding / response to xenobiotic stimulus / positive regulation of apoptotic process / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of cell population proliferation / intracellular membrane-bounded organelle / DNA damage response / chromatin / regulation of transcription by RNA polymerase II / protein kinase binding / positive regulation of DNA-templated transcription / Golgi apparatus / positive regulation of transcription by RNA polymerase II / nucleoplasm / identical protein binding / nucleus / metal ion binding / cytosol
Similarity search - Function
Tumour protein p73, SAM domain / p53 family signature. / p53, tetramerisation domain / P53 tetramerisation motif / p53, DNA-binding domain / P53 DNA-binding domain / p53 tumour suppressor family / p53-like tetramerisation domain superfamily / p53/RUNT-type transcription factor, DNA-binding domain superfamily / SAM domain (Sterile alpha motif) ...Tumour protein p73, SAM domain / p53 family signature. / p53, tetramerisation domain / P53 tetramerisation motif / p53, DNA-binding domain / P53 DNA-binding domain / p53 tumour suppressor family / p53-like tetramerisation domain superfamily / p53/RUNT-type transcription factor, DNA-binding domain superfamily / SAM domain (Sterile alpha motif) / p53-like transcription factor, DNA-binding / Sterile alpha motif. / Sterile alpha motif domain / Sterile alpha motif/pointed domain superfamily
Similarity search - Domain/homology
DNA / DNA (> 10) / Tumor protein p73
Similarity search - Component
Biological speciesHomo sapiens (human)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å
AuthorsKoley, T. / Roy Chowdhury, S. / Kumar, M. / Kaur, P. / Singh, T.P. / Viadiu, H. / Ethayathulla, A.S.
CitationJournal: Int.J.Biol.Macromol. / Year: 2022
Title: Deciphering the mechanism of p73 recognition of p53 response elements using the crystal structure of p73-DNA complexes and computational studies.
Authors: Koley, T. / Roy Chowdhury, S. / Kushwaha, T. / Kumar, M. / Inampudi, K.K. / Kaur, P. / Singh, T.P. / Viadiu, H. / Ethayathulla, A.S.
History
DepositionJun 1, 2021Deposition site: PDBJ / Processing site: PDBJ
Revision 1.0Apr 13, 2022Provider: repository / Type: Initial release
Revision 1.1Nov 29, 2023Group: Data collection / Refinement description
Category: chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model

-
Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

-
Assembly

Deposited unit
A: Tumor protein p73
B: Tumor protein p73
C: Tumor protein p73
D: Tumor protein p73
I: Tumor protein p73
J: Tumor protein p73
K: Tumor protein p73
L: Tumor protein p73
a: Tumor protein p73
b: Tumor protein p73
c: Tumor protein p73
d: Tumor protein p73
i: Tumor protein p73
j: Tumor protein p73
k: Tumor protein p73
l: Tumor protein p73
E: 12-mer DNA
F: 12-mer DNA
G: 12-mer DNA
H: 12-mer DNA
M: 12-mer DNA
N: 12-mer DNA
O: 12-mer DNA
P: 12-mer DNA
e: 12-mer DNA
f: 12-mer DNA
g: 12-mer DNA
h: 12-mer DNA
m: 12-mer DNA
n: 12-mer DNA
o: 12-mer DNA
p: 12-mer DNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)440,07648
Polymers439,03032
Non-polymers1,04716
Water1,51384
1
A: Tumor protein p73
B: Tumor protein p73
C: Tumor protein p73
D: Tumor protein p73
E: 12-mer DNA
F: 12-mer DNA
G: 12-mer DNA
H: 12-mer DNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)110,01912
Polymers109,7578
Non-polymers2624
Water905
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
2
I: Tumor protein p73
J: Tumor protein p73
K: Tumor protein p73
L: Tumor protein p73
M: 12-mer DNA
N: 12-mer DNA
O: 12-mer DNA
P: 12-mer DNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)110,01912
Polymers109,7578
Non-polymers2624
Water724
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
3
a: Tumor protein p73
b: Tumor protein p73
c: Tumor protein p73
d: Tumor protein p73
e: 12-mer DNA
f: 12-mer DNA
g: 12-mer DNA
h: 12-mer DNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)110,01912
Polymers109,7578
Non-polymers2624
Water905
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
4
i: Tumor protein p73
j: Tumor protein p73
k: Tumor protein p73
l: Tumor protein p73
m: 12-mer DNA
n: 12-mer DNA
o: 12-mer DNA
p: 12-mer DNA
hetero molecules


Theoretical massNumber of molelcules
Total (without water)110,01912
Polymers109,7578
Non-polymers2624
Water905
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)139.697, 105.496, 155.504
Angle α, β, γ (deg.)90.000, 112.360, 90.000
Int Tables number4
Space group name H-MP1211

-
Components

#1: Protein
Tumor protein p73 / p53-like transcription factor / p53-related protein


Mass: 23775.955 Da / Num. of mol.: 16
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Homo sapiens (human) / Gene: TP73, P73 / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 / References: UniProt: O15350
#2: DNA chain
12-mer DNA


Mass: 3663.392 Da / Num. of mol.: 16 / Source method: obtained synthetically / Source: (synth.) Homo sapiens (human)
#3: Chemical
ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 16 / Source method: obtained synthetically / Formula: Zn
#4: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 84 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestN

-
Experimental details

-
Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

CrystalDensity Matthews: 2.54 Å3/Da / Density % sol: 51.67 %
Crystal growTemperature: 293.15 K / Method: vapor diffusion, hanging drop / pH: 6
Details: 100 mM MES, pH-6.0, 0.1 M Ammonium acetate, 12% w/v PEg20K

-
Data collection

DiffractionMean temperature: 200 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: SSRL / Beamline: BL7-1 / Wavelength: 0.97 Å
DetectorType: ADSC QUANTUM 315r / Detector: CCD / Date: Feb 15, 2011
RadiationMonochromator: M / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97 Å / Relative weight: 1
ReflectionResolution: 2.9→100 Å / Num. obs: 91900 / % possible obs: 99.5 % / Redundancy: 6.7 % / Rmerge(I) obs: 0.08 / Net I/σ(I): 19.5
Reflection shellResolution: 2.9→3 Å / Rmerge(I) obs: 0.08 / Num. unique obs: 91900

-
Processing

Software
NameVersionClassification
PHENIX(1.18.2_3874: ???)refinement
PDB_EXTRACT3.27data extraction
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 3VD0

3vd0


Resolution: 2.9→40.93 Å / SU ML: 0.43 / Cross valid method: THROUGHOUT / σ(F): 1.35 / Phase error: 40.69 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.3061 4363 4.97 %
Rwork0.2406 --
obs0.2438 87805 95.05 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Displacement parametersBiso max: 217.08 Å2 / Biso mean: 90.1508 Å2 / Biso min: 30 Å2
Refinement stepCycle: final / Resolution: 2.9→40.93 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms21994 6975 16 84 29069
Biso mean--74.13 63.59 -
Num. residues----3387
LS refinement shellResolution: 2.9→2.94 Å
RfactorNum. reflection% reflection
Rfree0.4207 160 -
Rwork0.3435 2775 -
obs--96 %
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL11 (°2)L12 (°2)L13 (°2)L22 (°2)L23 (°2)L33 (°2)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T11 (Å2)T12 (Å2)T13 (Å2)T22 (Å2)T23 (Å2)T33 (Å2)Origin x (Å)Origin y (Å)Origin z (Å)
10.1267-0.1592-0.38070.93361.36172.2070.5241-0.7184-1.05710.48350.6640.60871.1698-0.2980.44760.78310.1365-0.19270.73640.48551.010282.144512.5475-0.2544
20.84470.3236-0.32560.54550.41640.8416-0.27810.37130.04540.15170.042-0.8101-0.49820.7454-0.00510.6082-0.10290.14840.81010.25250.964191.826925.6717-15.0771
30.1727-0.2715-0.08140.4350.10321.1111-0.21320.801-0.6769-0.20860.8264-0.2427-0.16020.21690.02350.6204-0.33860.08830.7505-0.0150.733583.215128.6748-18.5443
40.8996-0.09570.85450.26620.58462.54060.39990.4954-0.52850.22310.1969-0.26850.17730.45460.25280.4975-0.08330.14840.5068-0.01871.154992.282415.5297-12.5237
50.3259-0.4042-0.50320.71680.46421.2003-0.12640.1453-1.2338-0.0073-0.11340.01580.1913-1.8757-0.02820.6291-0.17780.02460.5802-0.07380.787370.158617.2591-11.1897
63.5644-0.62980.93210.1558-0.03960.61750.12651.2422-1.2825-0.0594-0.15730.69840.55160.3383-0.01160.7798-0.08890.30540.6838-0.34111.150178.42518.9462-19.8437
76.90941.79041.03962.1964-1.89422.8350.16411.1611-1.4417-0.7956-0.1176-0.39020.51510.72190.55470.4335-0.07660.48730.6622-0.08771.658395.782213.9129-18.9568
80.1883-0.12120.25290.1203-0.2140.453-0.39540.0607-0.6809-0.16780.1624-0.32110.2079-0.0957-0.00040.5201-0.01680.21010.622-0.00460.545876.067120.9411-17.2376
90.97390.72980.0060.90130.53971.0547-0.01690.0873-0.22840.0168-0.0224-0.41060.8444-0.2399-0.00680.70650.02050.27120.5040.12310.751386.646817.9132-9.7498
100.37820.34240.62620.33390.63821.23650.12950.00860.5149-1.0589-0.30740.0341-1.7943-0.5338-0.03341.19610.10390.12610.66020.11410.480379.617640.0291-14.0864
112.0665-0.5555-0.04091.0857-0.83050.7990.28710.1724-0.2259-0.0790.1985-0.0871-0.2709-0.76360.0390.59480.0805-0.05140.85210.30590.515637.871128.4316-22.6763
120.3588-0.00660.08371.58980.42551.118-0.06140.78380.2679-0.2674-0.0465-0.05690.1648-0.2925-0.0010.7468-0.1027-0.10331.02030.26030.484640.994519.225-25.109
131.78870.66420.79571.18150.53241.2827-0.04830.4982-0.02560.18910.06340.02140.3915-0.4945-0.01450.6929-0.18-0.18510.7310.2150.458339.914114.1001-17.028
141.7987-1.0049-0.45051.1953-0.59882.27980.31680.92370.4173-0.042-0.1523-0.4393-0.3477-0.26130.18050.612-0.0714-0.02940.86120.44650.532142.786227.4838-24.4781
150.91560.0964-0.34820.1278-0.2610.54910.45670.51971.1878-0.23060.05380.3586-0.2539-0.17930.08580.2470.1769-0.03650.62550.25171.233723.173330.68894.9434
160.2975-0.1-0.20460.15220.04060.27470.47590.40430.41210.27390.20871.1598-0.8332-0.51870.00360.57310.1130.04010.5422-0.04841.030230.430136.322511.8806
170.92941.00480.39781.5467-0.32271.1070.0070.39860.51010.26120.0360.1165-0.2674-0.0840.00030.59670.0362-0.01550.57750.13170.594428.768423.34326.4908
182.26740.1992-0.5110.9014-0.19140.13890.5508-0.61460.8540.84960.7296-0.17980.0590.79611.25150.4233-0.0246-0.3070.6087-0.18260.582535.444816.321319.9669
191.08960.73-0.10860.5949-0.40460.9244-0.1963-0.19010.29650.4285-0.39150.15660.2528-0.826-0.02160.5787-0.0116-0.05870.57550.0230.608621.411819.763412.0823
201.6061-0.9822-0.09850.7303-0.66733.12820.59530.00730.75250.2691-0.3341-0.0928-0.4482-0.22920.00360.59540.04310.06790.34490.14190.642231.388231.38076.9884
210.9389-0.1638-0.66652.07280.94860.82640.0025-1.2611-0.24510.674-0.5908-0.40680.778-0.3314-0.02440.680.0086-0.15131.68490.54640.40179.48717.366426.9563
220.76670.5435-0.46470.5732-0.09620.49050.1312-0.35540.7589-0.1398-0.2382-0.3223-0.45230.181-0.00030.4873-0.0437-0.00620.72920.18530.719972.322930.213910.9316
231.19321.62660.53322.45450.31090.7448-0.0748-1.2256-0.25720.2337-0.3217-0.04290.4286-0.09760.00310.4811-0.02050.14040.8070.25570.415369.107417.506619.5656
241.2032-1.3435-0.38081.99060.10250.34720.28060.0061-0.4435-0.3864-0.6505-0.22830.74460.1675-0.4321.0522-0.36-0.18060.83780.40730.461558.032612.67188.0723
251.0865-0.35750.61211.40490.64840.8991-0.264-0.6579-0.3841-0.45540.1383-0.12460.6949-0.02830.00090.6860.0539-0.02480.660.29540.722473.753911.176113.4512
261.33131.063-0.06011.01-0.32280.65390.2344-1.08040.00410.0473-0.185-0.1050.12660.17280.00130.5137-0.1029-0.04010.77290.19650.533269.247720.399118.4027
270.7172-0.48510.54410.3269-0.37280.4255-0.5278-1.90940.9471.1676-0.3415-0.2598-0.3595-0.6709-0.05211.0659-0.124-0.05610.9277-0.13771.171868.271141.144217.6012
280.4411-0.321-0.79034.135-1.14875.57410.4311-0.4967-0.02780.1046-0.3218-0.8207-1.22331.38970.06440.7231-0.1628-0.29210.6392-0.15560.303950.8693-0.55-6.1079
290.1009-0.2331-0.16940.55110.40010.26730.35111.2260.3831-1.08410.14110.0285-0.03330.27380.09310.9104-0.0601-0.26240.6891-0.0140.579236.6961-3.552-24.3763
300.30110.00690.00390.1172-0.20410.383-0.38020.4016-0.1202-0.629-0.10770.6405-0.1610.1169-0.00050.5894-0.0927-0.02390.67740.01690.654335.1727-6.3483-19.054
311.9987-1.76190.35611.698-0.43372.2398-0.5649-0.2833-0.8341-0.2733-0.3772-0.00150.26470.3744-0.0440.7166-0.0247-0.04860.7485-0.02960.566744.4076-13.0362-11.2436
320.7432-0.107-0.20320.0971-0.11410.256-0.2229-0.1235-0.88030.0928-0.4785-0.28790.1188-0.1308-0.00440.67930.20070.19870.80530.07611.009549.0383-20.6372-13.5074
330.1214-0.2464-0.19160.44650.3110.20140.13730.8978-0.0687-0.58080.08410.4317-0.30430.1839-0.00110.7554-0.04460.07750.9258-0.03920.581854.5395-6.4112-21.6823
340.4111-0.0755-0.11320.69940.2530.4995-0.1769-0.1356-0.48470.0073-0.3068-0.65730.19480.4054-0.00020.5765-0.02950.03580.71070.11890.611543.4762-11.9912-11.6627
350.5033-0.2834-0.15431.2553-0.72290.6160.37450.5272-0.23710.5511-0.13920.36710.18280.53-0.00220.5163-0.182-0.02240.6315-0.05250.548140.8534-5.9724-12.5452
360.44680.53730.09680.64880.13920.0684-0.24010.40340.5914-0.37730.34581.66150.2055-0.8030.00830.60630.0712-0.04070.9153-0.10950.701224.59-1.3076-16.1928
370.5463-1.11260.73232.2615-1.50410.9914-0.5830.1998-0.34360.3848-0.7655-0.8361.1363-0.539-0.2442.2226-0.6533-0.22551.08960.13151.218911.2104-54.8297-13.1716
380.2824-0.3071-0.14050.34880.01720.47680.1768-0.6365-0.12340.26830.22450.22820.7907-1.18520.0020.7191-0.2314-0.05061.08120.15440.87326.2487-34.7313-5.5514
390.39340.10360.32820.30270.22590.2916-0.3253-0.1039-1.23220.34210.4160.06711.0699-0.32630.00112.1759-0.2665-0.09790.7720.25361.251411.1946-50.6768-3.0039
401.0441-0.1583-0.49320.6763-0.32530.5070.06710.2507-0.7347-0.61720.1264-0.9250.70340.08210.00141.13120.1260.14820.7261-0.04480.973126.5098-36.5999-7.1247
410.43710.27130.410.652-0.19230.705-0.10050.1342-0.3402-0.26140.4382-0.0271.3138-0.87960.01661.1476-0.1089-0.03580.81420.37821.095317.4723-48.60350.9122
420.11-0.3392-0.0841.02780.31940.10580.4162-0.1868-0.2343-0.63110.6826-0.56391.02660.1540.37450.9059-0.2196-0.05330.57930.03740.873818.6893-35.465-8.071
430.06980.0006-0.04090.04060.08630.19030.3295-0.149-0.3401-0.23991.0167-0.23020.63791.06510.02421.48690.0588-0.11690.68870.05330.94916.2457-53.6943-6.9181
441.33830.0620.1718-0.00370.00310.03560.0398-0.1091-0.37970.2794-0.575-0.52580.8529-0.6206-0.3931.3004-0.31950.19790.41910.14420.635911.6219-41.563-10.235
450.3204-0.12910.02890.2720.0123-0.0014-0.6367-0.4074-0.0328-1.09790.50710.92220.6974-0.6529-0.01510.8073-0.1636-0.18671.0850.31520.60133.6348-27.2607-15.3978
461.53250.52530.03340.9242-0.90881.27360.4274-1.17520.1343-0.48650.21130.6799-0.5190.00650.01430.9411-0.2557-0.11061.48440.39331.1103-3.154-40.913722.5837
470.1329-0.0126-0.06260.1501-0.0130.0339-0.0429-0.52760.7060.6254-0.45040.8669-0.1956-0.0598-0.00720.939-0.5505-0.06461.73320.03880.8732-2.4705-30.525727.1259
480.7533-1.0009-0.57452.15240.36580.7318-0.0378-1.1992-0.70920.3851-0.0384-0.6740.46760.31140.00851.1184-0.1964-0.17381.41170.43250.87026.0861-40.816423.2556
492.899-0.55480.21060.24260.03730.0474-0.12030.1479-1.25451.15740.37570.1239-0.18190.347-0.12991.1436-0.3215-0.03732.13780.38220.719513.1478-39.709335.337
501.56111.5058-0.36971.7985-0.14510.24870.5453-0.48970.9729-0.4246-0.14730.6610.25-0.4851-0.07981.0179-0.1501-0.26021.95450.81651.21514.2016-48.144628.7933
510.6222-0.17630.3040.2574-0.27150.3464-0.1349-0.4731-0.4731-0.14840.20680.130.74890.4412-0.00151.0002-0.3207-0.02091.36310.25821.0426.0772-38.927624.3613
524.3202-0.58291.63670.9751-1.21161.6888-0.0515-1.87110.7970.07430.41010.0906-0.1135-0.3819-0.10790.8496-0.36740.08911.37840.23490.7344-3.7206-28.011420.7322
530.6806-0.0070.03430.83170.54030.5821-0.2547-0.2931-0.1392-0.31710.0444-0.4856-0.24820.0474-0.01090.59470.1565-0.17070.5364-0.05410.238941.05530.40527.5464
540.37350.0486-0.33440.2903-0.14380.3809-0.41691.0417-0.1222-0.88620.0370.1550.15740.0290.00060.8520.2176-0.17070.7715-0.19190.542423.5548-1.624315.0746
551.6748-0.39680.81051.93210.70570.9359-0.04950.0978-0.0433-0.4719-0.07240.06470.2395-0.0666-0.00410.69220.1004-0.07420.4102-0.150.313134.9385-8.580224.3367
56-0.01320.00510.00150.0364-0.02150.00970.67490.8306-1.3512-0.80190.0134-0.6698-0.2742-0.13240.07241.0194-0.2273-0.20550.5362-0.52820.513730.4418-23.116517.4291
570.08530.3012-0.05570.94410.31030.4311-0.36640.9397-0.2959-1.0160.0630.10810.73340.3775-0.87710.50860.5950.3693-1.1449-1.9405-1.194441.3773-10.196716.9833
581.00740.22651.08411.70790.25581.4791-0.44910.065-0.5709-0.3973-0.11050.09840.0838-0.2808-0.01470.480.1457-0.05130.4373-0.26350.460633.1596-8.903823.2482
590.1905-0.0487-0.24931.7019-0.38860.9797-0.40960.1883-0.0084-0.06150.27220.28710.0321-0.275200.58170.1235-0.05410.5181-0.1790.496922.64351.179322.4894
600.7848-0.0112-0.72660.46780.38240.96580.3515-0.032-0.6831-0.7156-0.1809-0.6772-0.37460.32290.00570.432-0.28540.19750.80760.08521.2471129.517922.731760.0649
611.2709-1.07480.54720.8632-0.46050.4350.2277-0.0466-0.94460.2779-0.0793-0.4429-0.11910.19330.00170.6267-0.21160.2030.746-0.22531.0646122.513819.830757.5826
620.51890.0507-0.72510.0285-0.12531.0506-0.08971.1697-1.25740.25380.43350.2540.61910.02850.08490.8795-0.13150.30030.8971-0.47421.2545118.207310.056247.2744
631.231-0.08980.2850.8894-0.17032.5198-0.45450.3444-1.14580.37720.1564-0.42090.02570.0359-00.5245-0.0910.10.5954-0.08251.1441124.681315.977457.7242
640.23020.17190.09170.10460.06040.0744-0.49480.04540.4844-0.2503-0.1072-0.2752-1.01180.70140.00191.0292-0.18510.13130.72970.09730.9564119.780339.469757.1226
652.6057-0.3324-1.00892.731-0.30951.5610.28120.72210.6996-0.5273-0.11030.2911-0.2652-0.4523-00.7563-0.1068-0.06590.93350.08150.782279.394523.951648.3855
660.1768-0.1308-0.0690.1528-0.05450.18730.2927-0.29350.33390.49030.06610.081-0.2848-0.43780.00160.6881-0.233-0.02150.9325-0.03770.689791.260212.881758.6135
672.7472-1.46890.01690.99990.32542.93620.17280.73480.2559-0.38120.27030.2965-0.016-0.42030.00110.5761-0.166-0.04470.77460.07110.583280.170922.115350.0506
680.1552-0.1053-0.36240.79730.38760.84950.4160.4454-0.00790.07620.1225-0.2651-0.50190.04810.06330.5398-0.0425-0.30070.9480.13890.876367.113719.593167.2912
690.21490.2284-0.06670.3808-0.37840.47320.2672-0.21440.1134-0.31030.57410.0298-0.9992-1.00390.00680.8135-0.06070.08420.96240.11731.33661.575234.796381.5009
700.6789-0.37480.76680.6959-1.29412.51750.02-0.49931.47150.23850.6570.9925-1.2061-1.1392-0.01021.0058-0.02390.1920.43610.11441.255670.779935.995284.1192
710.7020.5190.5811.9172-0.51261.2894-0.16840.5350.3582-0.14080.243-0.0636-0.1130.05880.00020.5941-0.07960.12220.5766-0.02080.797968.996523.017978.7267
720.1381-0.17060.03490.1769-0.06490.1072-0.0151-0.9962-0.39810.5781-0.15330.766-0.15080.3608-0.00150.9178-0.05140.10350.76440.07670.656271.356317.378191.4443
730.7947-0.57530.49411.1239-0.46352.1744-0.27610.5081-0.08040.03110.28860.22650.0417-0.0921-00.5258-0.14660.07810.5494-0.12870.859566.021922.182681.1347
741.44680.0652-0.37710.1397-0.34180.74710.12990.66641.0538-0.38140.0227-0.0755-0.3122-0.10460.01420.6518-0.15830.14270.52790.00731.191172.765137.81879.0388
760.61040.48710.02861.4490.81080.76120.2034-0.48030.55380.4136-0.5662-0.99480.2495-0.0494-0.00040.721-0.1543-0.02711.02940.25470.9323117.688523.058790.2044
770.26810.1457-0.21780.0607-0.10820.19440.2946-0.34710.4344-0.014-0.2117-0.92820.13420.31520.00190.735-0.09760.01130.74770.10760.8968110.751329.464384.6437
780.85630.67150.56672.2148-0.06250.4779-0.0021-0.6942-0.10440.9595-0.3255-0.3629-0.09050.289100.8232-0.0562-0.03671.21360.31020.8782109.475217.004591.4168
790.07040.0013-0.07920.00960.01520.0875-0.46660.1219-0.4237-1.1020.2254-0.0850.4023-0.1220.00380.9129-0.1307-0.02640.87680.10840.945798.499612.222779.9632
800.8729-0.78180.01861.02430.26820.8344-0.4063-0.3662-0.9158-0.5024-0.0643-0.96120.89980.397-0.00620.8154-0.06240.01470.75130.31851.1254114.00410.78385.1952
810.14590.08530.05170.6082-0.48220.4566-0.08280.0236-0.01930.19450.1634-0.12740.4534-0.5827-0.0020.76880.01170.0060.95370.15340.8244103.284722.360487.3499
820.11870.0665-0.05170.0383-0.02950.00440.0839-0.177-0.8240.2481-0.2468-0.22580.55010.03270.00131.2713-0.00030.15090.96180.44551.4671116.861711.869194.0683
830.44030.3394-0.23460.79020.52030.88340.0806-0.80630.61490.4330.17080.2120.34480.4724-0.0020.6326-0.11380.02640.8305-0.02820.9998110.462732.210389.9049
840.554-0.4432-0.29070.38720.0550.66350.7125-1.15070.38920.8079-0.31530.1613-0.6540.41160.04790.7612-0.1349-0.03440.87880.23020.668290.7346-0.995564.2764
850.4391-0.13170.2760.0399-0.0720.1744-0.55740.5978-0.76-0.48150.3940.00210.3168-0.41630.15320.7495-0.68950.24380.91830.24640.528173.7413-5.499445.9076
860.17480.05490.18770.11380.02860.24350.12140.61690.2609-0.7783-0.2685-0.8563-0.6544-0.3936-0.00150.6646-0.01030.05260.5786-0.10250.689275.3095-6.594852.9405
872.4253-1.2220.63492.09430.39441.7833-0.0659-0.2207-0.9720.2158-0.2847-0.10190.27520.1647-0.00280.5291-0.11590.15910.5277-0.01030.810185.5048-15.93858.3928
880.8462-0.6118-0.16170.46240.00710.1269-0.3689-0.5475-0.673-0.1879-0.2246-0.30540.25730.6660.00240.5866-0.13310.40840.70640.28361.217893.5033-11.661756.6876
891.0173-0.34371.06010.96250.2251.4266-0.0057-0.2447-0.77070.1899-0.0712-0.13080.4767-0.30990.00110.6435-0.08760.15130.54090.04550.691383.6747-12.34360.1978
900.29880.5224-0.33491.3327-0.25930.8189-0.5401-0.17470.22170.03790.24160.2761-0.0868-0.4014-0.00050.5814-0.01010.05040.63990.02380.550571.9402-3.385857.8849
910.00160.0125-0.01730.1411-0.15220.14830.0927-0.39830.28240.5042-0.47140.17490.7905-0.6903-0.56331.9865-1.1078-0.33191.2801-0.07620.97248.2092-55.865460.0997
922.9947-0.3527-0.83810.69490.19250.26920.54590.28631.0544-0.21340.06770.09270.3115-1.27120.18390.7169-0.3505-0.10081.07280.15840.368346.4228-35.144766.2288
930.6182-0.02080.23060.2967-0.00590.829-0.1883-0.0424-0.543-0.54180.22490.21091.8703-0.74250.65421.5943-0.58570.04730.49840.0820.68751.518-51.014868.8494
940.5584-0.1379-0.43950.20610.06240.34530.05960.8549-0.0462-1.2309-0.3257-0.6339-0.33920.0559-0.00540.9706-0.02050.06640.56530.01190.864865.6867-37.883257.9283
950.02120.05590.08290.24640.0940.4124-0.18910.2609-0.32241.1386-0.3744-0.9940.58251.6186-0.00260.7648-0.0630.05210.70170.02221.15467.9741-35.940373.4561
962.5655-0.2165-1.87020.01530.14981.3644-0.7745-0.9337-0.29840.7706-0.5882-0.41220.8063-0.1935-0.29091.0931-0.3462-0.21360.46610.01910.674859.8998-44.252676.5132
972.51672.24161.89342.00091.68451.42320.67160.3274-1.0565-0.09630.2022-0.86440.72950.24441.83511.8343-0.02810.27660.3127-0.15530.765.4232-49.888266.6552
983.9435-1.361-0.75283.2031-0.34570.82780.29260.16870.8477-0.2781-0.2459-0.70891.0986-0.781-0.16610.9187-0.4763-0.13630.4644-0.3332-0.172453.9861-40.906868.6053
990.8724-0.4470.27450.5192-0.15630.09680.34990.1255-0.181-0.1875-0.0342-0.1438-0.05790.0634-0.22132.1379-1.11790.13010.3102-0.14860.63755.2557-54.943164.3825
1000.1949-0.30170.04530.49050.17410.3493-0.45690.5750.6965-0.69660.90050.0520.0591-0.00190.03040.866-0.2436-0.01231.19960.26050.647746.6401-31.034757.7602
1011.53170.5377-0.89351.9274-0.43681.2133-0.15120.16240.8567-0.81510.93010.53680.087-0.66370.18320.7611-0.2853-0.11910.91220.32030.422139.0525-44.229493.148
1021.6174-0.77-0.57962.4883-0.40871.66180.03380.53460.4429-0.67120.5320.1507-0.1097-0.75760.37280.3534-0.1587-0.19620.67860.25040.316943.6681-37.860396.4364
1032.7343-1.30010.47690.6179-0.22780.0846-0.1449-1.1193-0.51070.90920.3898-0.2043-0.45710.41350.00020.5686-0.1209-0.07560.84060.01180.417256.711-36.6002107.0334
1041.75160.2088-0.44492.0054-0.48332.0068-0.36760.10330.22280.13230.69030.0356-0.0033-0.70930.14810.3784-0.1159-0.09850.50490.1290.321645.8035-43.462899.4595
1052.97890.9576-1.3170.3394-0.30341.23840.40190.67791.1386-0.35080.37670.8778-0.267-0.94540.80650.59630.0838-0.19830.74840.42270.484736.5344-28.516993.0129
1060.47130.01920.27390.61350.62360.73330.5058-0.74850.19180.5614-0.0530.1763-0.19221.08490.00870.7338-0.0257-0.01640.89410.08160.831581.31780.079699.5247
1070.30760.2428-0.41710.1568-0.2960.50330.04560.07720.9177-0.09130.26270.488-0.886-0.07640.00040.6857-0.08920.01720.53010.17880.682163.8512-2.080687.1258
1081.336-0.83560.75412.02030.80591.7041-0.2738-0.4726-0.20110.22090.3074-0.31640.0892-0.3217-0.00770.56480.0826-0.05310.6510.17580.481976.7867-6.57996.3778
1090.3127-0.04670.13840.0354-0.08940.2806-0.4932-0.3404-0.4189-0.7401-0.0128-0.31870.64420.0425-0.05050.7651-0.0220.02680.56570.29760.781369.8831-22.605391.0663
1102.5939-0.24480.60681.96050.51580.7263-0.0443-0.4686-0.4062-0.26030.2341-0.24650.00390.31560.00290.54360.0271-0.02470.65520.23310.471877.7214-9.79192.2501
1110.93110.4082-0.59280.93-0.35060.6984-0.2712-0.49051.02260.13380.27320.22750.00070.14460.00750.55610.1315-0.18940.70370.16590.599863.01070.634394.5864
1120.3043-0.19930.10440.4693-0.15770.04940.1935-0.12321.05280.08330.64790.12860.10830.43180.01950.9826-0.36560.21761.04110.20660.809565.04937.6742-22.2954
1130.4611-0.47970.14970.4554-0.16750.04480.56030.32731.2299-0.0383-0.06560.3713-0.3279-0.08440.00120.9348-0.16880.14480.92990.00820.920464.067737.9211-22.3119
1141.0808-0.19530.12890.8419-0.07840.00070.3832-0.40921.00620.4191-0.175-0.40270.22580.0679-0.00090.819-0.11710.12030.758-0.05331.086451.989840.661813.4259
1150.62260.073-0.38520.46380.06120.25210.0595-0.49571.26190.12120.16430.2658-0.3781-0.2723-0.00010.97810.1120.13980.8393-0.02351.129150.608941.085112.5976
1160.251-0.2058-0.09920.4278-0.05020.1508-0.00770.52540.9336-0.33460.8866-0.1688-0.49-0.63270.00260.941-0.11290.08810.9661-0.12590.853716.6131-15.1457-15.9035
1170.8591-0.32590.39030.9125-0.31180.1890.36670.10.4688-0.53790.30670.53540.1259-0.6164-0.00031.0377-0.02260.12251.1787-0.15590.859316.1935-16.3072-16.2356
1181.7032-0.9303-0.02261.2466-0.15590.03250.4386-1.1038-0.48691.3477-0.41660.7754-0.4946-0.0791-0.00781.269-0.0152-0.08781.5968-0.84361.19145.5939-10.552223.0928
1190.2805-0.12870.29720.90410.19390.34870.6432-0.1121-0.08530.2106-0.35641.1017-0.0116-1.14480.00121.0217-0.13030.15041.4187-0.5351.13185.1985-11.634622.6285
1200.74820.20360.20440.5295-0.31360.2987-0.1778-0.05061.45820.0160.58070.25580.11760.8869-0.00040.94470.01190.20261.0264-0.02591.0963105.227337.485749.8136
1210.4298-0.02440.29270.3697-0.25070.3-0.07580.61691.8027-0.83910.63020.886-0.3696-0.04050.00220.9341-0.27090.23461.083-0.13161.1562104.281937.707149.7326
1221.4201-0.10490.71130.5881-0.19530.36280.8875-1.64412.2040.6607-0.3816-0.0290.1210.7168-0.01161.2432-0.22750.08240.9518-0.07931.197292.330540.142585.7028
1230.33050.0687-0.2240.19260.05210.19460.3744-0.75681.17491.0146-0.67780.7339-0.4661-0.755-0.00181.029-0.15240.18761.1323-0.3151.414490.65940.420886.4995
1240.45950.0303-0.15940.8293-0.27010.124-0.09450.41570.5445-0.19690.65320.122-0.4557-0.3768-0.00050.99980.04370.23370.92340.14610.716256.7294-15.505556.0647
1250.75780.02640.13190.99580.29620.5328-0.07250.79940.3304-0.00020.91570.2109-0.0985-1.52090.01331.0886-0.27930.24241.05280.03420.846156.3442-16.66355.7377
1260.48320.26980.22320.79160.20440.0927-0.2415-0.19220.84260.50560.57210.1387-0.59460.21340.00621.05820.20410.03990.83360.27650.696345.8279-11.066795.2259
1270.1852-0.6742-0.60132.58721.51552.2961-0.75510.74680.30990.0651-0.17221.78560.0184-0.3062-0.84590.50220.456-0.3920.59681.19010.126945.3124-12.144694.5768
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 111 through 119 )A111 - 119
2X-RAY DIFFRACTION2chain 'A' and (resid 120 through 141 )A120 - 141
3X-RAY DIFFRACTION3chain 'A' and (resid 142 through 158 )A142 - 158
4X-RAY DIFFRACTION4chain 'A' and (resid 159 through 181 )A159 - 181
5X-RAY DIFFRACTION5chain 'A' and (resid 182 through 199 )A182 - 199
6X-RAY DIFFRACTION6chain 'A' and (resid 200 through 233 )A200 - 233
7X-RAY DIFFRACTION7chain 'A' and (resid 234 through 249 )A234 - 249
8X-RAY DIFFRACTION8chain 'A' and (resid 250 through 270 )A250 - 270
9X-RAY DIFFRACTION9chain 'A' and (resid 271 through 297 )A271 - 297
10X-RAY DIFFRACTION10chain 'A' and (resid 298 through 312 )A298 - 312
11X-RAY DIFFRACTION11chain 'B' and (resid 112 through 158 )B112 - 158
12X-RAY DIFFRACTION12chain 'B' and (resid 159 through 199 )B159 - 199
13X-RAY DIFFRACTION13chain 'B' and (resid 200 through 249 )B200 - 249
14X-RAY DIFFRACTION14chain 'B' and (resid 250 through 312 )B250 - 312
15X-RAY DIFFRACTION15chain 'C' and (resid 112 through 141 )C112 - 141
16X-RAY DIFFRACTION16chain 'C' and (resid 142 through 158 )C142 - 158
17X-RAY DIFFRACTION17chain 'C' and (resid 159 through 199 )C159 - 199
18X-RAY DIFFRACTION18chain 'C' and (resid 200 through 214 )C200 - 214
19X-RAY DIFFRACTION19chain 'C' and (resid 215 through 249 )C215 - 249
20X-RAY DIFFRACTION20chain 'C' and (resid 250 through 312 )C250 - 312
21X-RAY DIFFRACTION21chain 'D' and (resid 113 through 127 )D113 - 127
22X-RAY DIFFRACTION22chain 'D' and (resid 128 through 158 )D128 - 158
23X-RAY DIFFRACTION23chain 'D' and (resid 159 through 199 )D159 - 199
24X-RAY DIFFRACTION24chain 'D' and (resid 200 through 214 )D200 - 214
25X-RAY DIFFRACTION25chain 'D' and (resid 215 through 249 )D215 - 249
26X-RAY DIFFRACTION26chain 'D' and (resid 250 through 297 )D250 - 297
27X-RAY DIFFRACTION27chain 'D' and (resid 298 through 311 )D298 - 311
28X-RAY DIFFRACTION28chain 'I' and (resid 113 through 127 )I113 - 127
29X-RAY DIFFRACTION29chain 'I' and (resid 128 through 141 )I128 - 141
30X-RAY DIFFRACTION30chain 'I' and (resid 142 through 158 )I142 - 158
31X-RAY DIFFRACTION31chain 'I' and (resid 159 through 203 )I159 - 203
32X-RAY DIFFRACTION32chain 'I' and (resid 204 through 233 )I204 - 233
33X-RAY DIFFRACTION33chain 'I' and (resid 234 through 249 )I234 - 249
34X-RAY DIFFRACTION34chain 'I' and (resid 250 through 283 )I250 - 283
35X-RAY DIFFRACTION35chain 'I' and (resid 284 through 297 )I284 - 297
36X-RAY DIFFRACTION36chain 'I' and (resid 298 through 311 )I298 - 311
37X-RAY DIFFRACTION37chain 'J' and (resid 114 through 126 )J114 - 126
38X-RAY DIFFRACTION38chain 'J' and (resid 127 through 158 )J127 - 158
39X-RAY DIFFRACTION39chain 'J' and (resid 159 through 181 )J159 - 181
40X-RAY DIFFRACTION40chain 'J' and (resid 182 through 214 )J182 - 214
41X-RAY DIFFRACTION41chain 'J' and (resid 215 through 249 )J215 - 249
42X-RAY DIFFRACTION42chain 'J' and (resid 250 through 270 )J250 - 270
43X-RAY DIFFRACTION43chain 'J' and (resid 271 through 283 )J271 - 283
44X-RAY DIFFRACTION44chain 'J' and (resid 284 through 297 )J284 - 297
45X-RAY DIFFRACTION45chain 'J' and (resid 298 through 310 )J298 - 310
46X-RAY DIFFRACTION46chain 'K' and (resid 112 through 141 )K112 - 141
47X-RAY DIFFRACTION47chain 'K' and (resid 142 through 158 )K142 - 158
48X-RAY DIFFRACTION48chain 'K' and (resid 159 through 199 )K159 - 199
49X-RAY DIFFRACTION49chain 'K' and (resid 200 through 223 )K200 - 223
50X-RAY DIFFRACTION50chain 'K' and (resid 224 through 249 )K224 - 249
51X-RAY DIFFRACTION51chain 'K' and (resid 250 through 283 )K250 - 283
52X-RAY DIFFRACTION52chain 'K' and (resid 284 through 312 )K284 - 312
53X-RAY DIFFRACTION53chain 'L' and (resid 112 through 130 )L112 - 130
54X-RAY DIFFRACTION54chain 'L' and (resid 131 through 158 )L131 - 158
55X-RAY DIFFRACTION55chain 'L' and (resid 159 through 199 )L159 - 199
56X-RAY DIFFRACTION56chain 'L' and (resid 200 through 214 )L200 - 214
57X-RAY DIFFRACTION57chain 'L' and (resid 215 through 249 )L215 - 249
58X-RAY DIFFRACTION58chain 'L' and (resid 250 through 283 )L250 - 283
59X-RAY DIFFRACTION59chain 'L' and (resid 284 through 311 )L284 - 311
60X-RAY DIFFRACTION60chain 'a' and (resid 113 through 141 )a113 - 141
61X-RAY DIFFRACTION61chain 'a' and (resid 142 through 199 )a142 - 199
62X-RAY DIFFRACTION62chain 'a' and (resid 200 through 223 )a200 - 223
63X-RAY DIFFRACTION63chain 'a' and (resid 224 through 297 )a224 - 297
64X-RAY DIFFRACTION64chain 'a' and (resid 298 through 311 )a298 - 311
65X-RAY DIFFRACTION65chain 'b' and (resid 112 through 199 )b112 - 199
66X-RAY DIFFRACTION66chain 'b' and (resid 200 through 214 )b200 - 214
67X-RAY DIFFRACTION67chain 'b' and (resid 215 through 310 )b215 - 310
68X-RAY DIFFRACTION68chain 'c' and (resid 111 through 120 )c111 - 120
69X-RAY DIFFRACTION69chain 'c' and (resid 121 through 141 )c121 - 141
70X-RAY DIFFRACTION70chain 'c' and (resid 142 through 158 )c142 - 158
71X-RAY DIFFRACTION71chain 'c' and (resid 159 through 199 )c159 - 199
72X-RAY DIFFRACTION72chain 'c' and (resid 200 through 223 )c200 - 223
73X-RAY DIFFRACTION73chain 'c' and (resid 224 through 283 )c224 - 283
74X-RAY DIFFRACTION74chain 'c' and (resid 284 through 310 )c284 - 310
76X-RAY DIFFRACTION76chain 'd' and (resid 113 through 141 )d113 - 141
77X-RAY DIFFRACTION77chain 'd' and (resid 142 through 158 )d142 - 158
78X-RAY DIFFRACTION78chain 'd' and (resid 159 through 199 )d159 - 199
79X-RAY DIFFRACTION79chain 'd' and (resid 200 through 214 )d200 - 214
80X-RAY DIFFRACTION80chain 'd' and (resid 215 through 249 )d215 - 249
81X-RAY DIFFRACTION81chain 'd' and (resid 250 through 270 )d250 - 270
82X-RAY DIFFRACTION82chain 'd' and (resid 271 through 283 )d271 - 283
83X-RAY DIFFRACTION83chain 'd' and (resid 284 through 310 )d284 - 310
84X-RAY DIFFRACTION84chain 'i' and (resid 112 through 130 )i112 - 130
85X-RAY DIFFRACTION85chain 'i' and (resid 131 through 141 )i131 - 141
86X-RAY DIFFRACTION86chain 'i' and (resid 142 through 158 )i142 - 158
87X-RAY DIFFRACTION87chain 'i' and (resid 159 through 223 )i159 - 223
88X-RAY DIFFRACTION88chain 'i' and (resid 224 through 249 )i224 - 249
89X-RAY DIFFRACTION89chain 'i' and (resid 250 through 283 )i250 - 283
90X-RAY DIFFRACTION90chain 'i' and (resid 284 through 312 )i284 - 312
91X-RAY DIFFRACTION91chain 'j' and (resid 116 through 126 )j116 - 126
92X-RAY DIFFRACTION92chain 'j' and (resid 127 through 158 )j127 - 158
93X-RAY DIFFRACTION93chain 'j' and (resid 159 through 181 )j159 - 181
94X-RAY DIFFRACTION94chain 'j' and (resid 182 through 199 )j182 - 199
95X-RAY DIFFRACTION95chain 'j' and (resid 200 through 214 )j200 - 214
96X-RAY DIFFRACTION96chain 'j' and (resid 215 through 223 )j215 - 223
97X-RAY DIFFRACTION97chain 'j' and (resid 224 through 239 )j224 - 239
98X-RAY DIFFRACTION98chain 'j' and (resid 240 through 270 )j240 - 270
99X-RAY DIFFRACTION99chain 'j' and (resid 271 through 287 )j271 - 287
100X-RAY DIFFRACTION100chain 'j' and (resid 288 through 311 )j288 - 311
101X-RAY DIFFRACTION101chain 'k' and (resid 107 through 141 )k107 - 141
102X-RAY DIFFRACTION102chain 'k' and (resid 142 through 199 )k142 - 199
103X-RAY DIFFRACTION103chain 'k' and (resid 200 through 214 )k200 - 214
104X-RAY DIFFRACTION104chain 'k' and (resid 215 through 283 )k215 - 283
105X-RAY DIFFRACTION105chain 'k' and (resid 284 through 312 )k284 - 312
106X-RAY DIFFRACTION106chain 'l' and (resid 112 through 130 )l112 - 130
107X-RAY DIFFRACTION107chain 'l' and (resid 131 through 158 )l131 - 158
108X-RAY DIFFRACTION108chain 'l' and (resid 159 through 194 )l159 - 194
109X-RAY DIFFRACTION109chain 'l' and (resid 195 through 217 )l195 - 217
110X-RAY DIFFRACTION110chain 'l' and (resid 218 through 283 )l218 - 283
111X-RAY DIFFRACTION111chain 'l' and (resid 284 through 311 )l284 - 311
112X-RAY DIFFRACTION112chain 'E' and (resid 398 through 408 )E398 - 408
113X-RAY DIFFRACTION113chain 'F' and (resid 411 through 421 )F411 - 421
114X-RAY DIFFRACTION114chain 'G' and (resid 500 through 511 )G500 - 511
115X-RAY DIFFRACTION115chain 'H' and (resid 512 through 523 )H512 - 523
116X-RAY DIFFRACTION116chain 'M' and (resid 410 through 421 )M410 - 421
117X-RAY DIFFRACTION117chain 'N' and (resid 398 through 409 )N398 - 409
118X-RAY DIFFRACTION118chain 'O' and (resid 410 through 421 )O410 - 421
119X-RAY DIFFRACTION119chain 'P' and (resid 398 through 409 )P398 - 409
120X-RAY DIFFRACTION120chain 'e' and (resid 398 through 408 )e398 - 408
121X-RAY DIFFRACTION121chain 'f' and (resid 411 through 421 )f411 - 421
122X-RAY DIFFRACTION122chain 'g' and (resid 500 through 511 )g500 - 511
123X-RAY DIFFRACTION123chain 'h' and (resid 512 through 522 )h512 - 522
124X-RAY DIFFRACTION124chain 'm' and (resid 410 through 421 )m410 - 421
125X-RAY DIFFRACTION125chain 'n' and (resid 398 through 409 )n398 - 409
126X-RAY DIFFRACTION126chain 'o' and (resid 410 through 421 )o410 - 421
127X-RAY DIFFRACTION127chain 'p' and (resid 398 through 409 )p398 - 409

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

Read more