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- PDB-7ew5: immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5 -

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基本情報

登録情報
データベース: PDB / ID: 7ew5
タイトルimmune complex of HPV6 L1 pentamer and neutralizing antibody 13H5
要素
  • Heavy chain of 13H5
  • Light chain of 13H5
  • Major capsid protein L1
キーワードVIRAL PROTEIN / immune complex
機能・相同性
機能・相同性情報


T=7 icosahedral viral capsid / endocytosis involved in viral entry into host cell / virion attachment to host cell / host cell nucleus / structural molecule activity
類似検索 - 分子機能
Major capsid L1 (late) protein, Papillomavirus / Major capsid L1 (late) superfamily, Papillomavirus / L1 (late) protein / Double-stranded DNA virus, group I, capsid
類似検索 - ドメイン・相同性
Major capsid protein L1
類似検索 - 構成要素
生物種Human papillomavirus type 6 (パピローマウイルス)
Mus musculus (ハツカネズミ)
手法X線回折 / シンクロトロン / 分子置換 / 解像度: 3.606 Å
データ登録者Wang, Z.P. / Wang, D.N. / Gu, Y. / Li, S.W.
資金援助 中国, 1件
組織認可番号
National Science Foundation (NSF, China) 中国
引用ジャーナル: Sci Bull (Beijing) / : 2024
タイトル: Rational design of a cross-type HPV vaccine through immunodominance shift guided by a cross-neutralizing antibody.
著者: Wang, Z. / Wang, D. / Chen, J. / Gao, F. / Jiang, Y. / Yang, C. / Qian, C. / Chi, X. / Zhang, S. / Xu, Y. / Lu, Y. / Shen, J. / Zhang, C. / Li, J. / Zhou, L. / Li, T. / Zheng, Q. / Yu, H. / ...著者: Wang, Z. / Wang, D. / Chen, J. / Gao, F. / Jiang, Y. / Yang, C. / Qian, C. / Chi, X. / Zhang, S. / Xu, Y. / Lu, Y. / Shen, J. / Zhang, C. / Li, J. / Zhou, L. / Li, T. / Zheng, Q. / Yu, H. / Li, S. / Xia, N. / Gu, Y.
履歴
登録2021年5月24日登録サイト: PDBJ / 処理サイト: PDBJ
改定 1.02022年6月1日Provider: repository / タイプ: Initial release
改定 1.12022年6月8日Group: Derived calculations
カテゴリ: pdbx_struct_assembly / pdbx_struct_assembly_gen
改定 1.22023年11月29日Group: Data collection / Refinement description
カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / pdbx_initial_refinement_model / struct_ncs_dom_lim
Item: _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id ..._struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_comp_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_comp_id / _struct_ncs_dom_lim.end_label_seq_id
改定 1.32024年10月23日Group: Structure summary
カテゴリ: pdbx_entry_details / pdbx_modification_feature
改定 1.42025年2月26日Group: Database references / カテゴリ: citation / citation_author
Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

ダウンロードとリンク

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集合体

登録構造単位
A: Major capsid protein L1
D: Major capsid protein L1
G: Major capsid protein L1
J: Major capsid protein L1
M: Major capsid protein L1
P: Major capsid protein L1
S: Major capsid protein L1
V: Major capsid protein L1
Y: Major capsid protein L1
b: Major capsid protein L1
B: Heavy chain of 13H5
C: Light chain of 13H5
E: Heavy chain of 13H5
F: Light chain of 13H5
H: Heavy chain of 13H5
I: Light chain of 13H5
K: Heavy chain of 13H5
L: Light chain of 13H5
N: Heavy chain of 13H5
O: Light chain of 13H5
g: Heavy chain of 13H5
j: Light chain of 13H5
Q: Heavy chain of 13H5
R: Light chain of 13H5
T: Heavy chain of 13H5
U: Light chain of 13H5
W: Heavy chain of 13H5
X: Light chain of 13H5
Z: Heavy chain of 13H5
a: Light chain of 13H5


分子量 (理論値)分子数
合計 (水以外)1,024,20630
ポリマ-1,024,20630
非ポリマー00
00
1
A: Major capsid protein L1
D: Major capsid protein L1
G: Major capsid protein L1
J: Major capsid protein L1
M: Major capsid protein L1
B: Heavy chain of 13H5
C: Light chain of 13H5
E: Heavy chain of 13H5
F: Light chain of 13H5
H: Heavy chain of 13H5
I: Light chain of 13H5
K: Heavy chain of 13H5
L: Light chain of 13H5
N: Heavy chain of 13H5
O: Light chain of 13H5


分子量 (理論値)分子数
合計 (水以外)512,10315
ポリマ-512,10315
非ポリマー00
0
タイプ名称対称操作
identity operation1_555x,y,z1
2
P: Major capsid protein L1
S: Major capsid protein L1
V: Major capsid protein L1
Y: Major capsid protein L1
b: Major capsid protein L1
g: Heavy chain of 13H5
j: Light chain of 13H5
Q: Heavy chain of 13H5
R: Light chain of 13H5
T: Heavy chain of 13H5
U: Light chain of 13H5
W: Heavy chain of 13H5
X: Light chain of 13H5
Z: Heavy chain of 13H5
a: Light chain of 13H5


分子量 (理論値)分子数
合計 (水以外)512,10315
ポリマ-512,10315
非ポリマー00
0
タイプ名称対称操作
identity operation1_555x,y,z1
単位格子
Length a, b, c (Å)139.090, 208.309, 205.948
Angle α, β, γ (deg.)90.000, 95.610, 90.000
Int Tables number4
Space group name H-MP1211
非結晶学的対称性 (NCS)NCSドメイン:
IDEns-ID詳細
11chain A
21chain D
31chain G
41chain J
51chain M
61chain P
71chain S
81chain V
91chain Y
101chain b
12chain B
22chain E
32chain H
42chain K
52chain N
62chain Q
72chain T
82chain W
92chain Z
102chain g
13chain C
23chain F
33chain I
43chain L
53chain O
63chain R
73chain U
83chain X
93chain a
103chain j

NCSドメイン領域:

Component-ID: 1

Dom-IDEns-IDBeg auth comp-IDBeg label comp-IDEnd auth comp-IDEnd label comp-IDSelection detailsAuth asym-IDLabel asym-IDAuth seq-IDLabel seq-ID
11LYSLYSSERSERchain AAA12 - 46015 - 463
21LYSLYSSERSERchain DDB12 - 46015 - 463
31LYSLYSSERSERchain GGC12 - 46015 - 463
41LYSLYSSERSERchain JJD12 - 46015 - 463
51LYSLYSSERSERchain MME12 - 46015 - 463
61LYSLYSSERSERchain PPF12 - 46015 - 463
71LYSLYSSERSERchain SSG12 - 46015 - 463
81LYSLYSSERSERchain VVH12 - 46015 - 463
91LYSLYSSERSERchain YYI12 - 46015 - 463
101LYSLYSSERSERchain bbJ12 - 46015 - 463
12GLUGLUVALVALchain BBK1 - 2181 - 218
22GLUGLUVALVALchain EEM1 - 2181 - 218
32GLUGLUVALVALchain HHO1 - 2181 - 218
42GLUGLUVALVALchain KKQ1 - 2181 - 218
52GLUGLUVALVALchain NNS1 - 2181 - 218
62GLUGLUVALVALchain QQW1 - 2181 - 218
72GLUGLUVALVALchain TTY1 - 2181 - 218
82GLUGLUVALVALchain WWAA1 - 2181 - 218
92GLUGLUVALVALchain ZZCA1 - 2181 - 218
102GLUGLUVALVALchain ggU1 - 2181 - 218
13ASPASPCYSCYSchain CCL1 - 2141 - 214
23ASPASPCYSCYSchain FFN1 - 2141 - 214
33ASPASPCYSCYSchain IIP1 - 2141 - 214
43ASPASPCYSCYSchain LLR1 - 2141 - 214
53ASPASPCYSCYSchain OOT1 - 2141 - 214
63ASPASPCYSCYSchain RRX1 - 2141 - 214
73ASPASPCYSCYSchain UUZ1 - 2141 - 214
83ASPASPCYSCYSchain XXBA1 - 2141 - 214
93ASPASPCYSCYSchain aaDA1 - 2141 - 214
103ASPASPCYSCYSchain jjV1 - 2141 - 214

NCSアンサンブル:
ID
1
2
3

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要素

#1: タンパク質
Major capsid protein L1


分子量: 55098.113 Da / 分子数: 10 / 由来タイプ: 組換発現
由来: (組換発現) Human papillomavirus type 6 (パピローマウイルス)
遺伝子: L1 / 発現宿主: Escherichia coli (大腸菌) / 参照: UniProt: Q9W9C6
#2: 抗体
Heavy chain of 13H5


分子量: 23721.373 Da / 分子数: 10 / 由来タイプ: 天然 / 由来: (天然) Mus musculus (ハツカネズミ)
#3: 抗体
Light chain of 13H5


分子量: 23601.086 Da / 分子数: 10 / 由来タイプ: 天然 / 由来: (天然) Mus musculus (ハツカネズミ)
Has protein modificationY

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実験情報

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実験

実験手法: X線回折 / 使用した結晶の数: 1

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試料調製

結晶マシュー密度: 2.9 Å3/Da / 溶媒含有率: 57.57 %
結晶化温度: 293.15 K / 手法: 蒸気拡散法 / 詳細: 0.1M Hepes pH 7.0, 8.2% PEG 20000

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データ収集

回折平均測定温度: 123.15 K / Serial crystal experiment: N
放射光源由来: シンクロトロン / サイト: SSRF / ビームライン: BL17U1 / 波長: 0.9795 Å
検出器タイプ: DECTRIS PILATUS 2M / 検出器: PIXEL / 日付: 2013年10月20日
放射プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray
放射波長波長: 0.9795 Å / 相対比: 1
反射解像度: 3.6→50 Å / Num. obs: 133760 / % possible obs: 99.9 % / 冗長度: 3.8 % / Rsym value: 0.306 / Net I/σ(I): 5.1
反射 シェル解像度: 3.61→3.67 Å / Num. unique obs: 12913 / Rsym value: 0.955 / % possible all: 99.9

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解析

ソフトウェア
名称バージョン分類
HKL-2000データスケーリング
PHENIX1.15.2_3472精密化
PDB_EXTRACT3.27データ抽出
HKL-2000データ削減
PHASER位相決定
精密化構造決定の手法: 分子置換
開始モデル: 1PLG, 5Y9E
解像度: 3.606→49.019 Å / SU ML: 0.55 / 交差検証法: THROUGHOUT / σ(F): 1.35 / 位相誤差: 30.82 / 立体化学のターゲット値: ML
Rfactor反射数%反射
Rfree0.293 6718 5.03 %
Rwork0.2522 126901 -
obs0.2542 133619 99.46 %
溶媒の処理減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å / 溶媒モデル: FLAT BULK SOLVENT MODEL
原子変位パラメータBiso max: 277.92 Å2 / Biso mean: 85.4272 Å2 / Biso min: 22.55 Å2
精密化ステップサイクル: final / 解像度: 3.606→49.019 Å
タンパク質核酸リガンド溶媒全体
原子数65550 0 0 0 65550
残基数----8470
Refine LS restraints NCS
Ens-IDDom-IDAuth asym-IDRefine-IDRmsタイプ
11A20081X-RAY DIFFRACTION10.265TORSIONAL
12D20081X-RAY DIFFRACTION10.265TORSIONAL
13G20081X-RAY DIFFRACTION10.265TORSIONAL
14J20081X-RAY DIFFRACTION10.265TORSIONAL
15M20081X-RAY DIFFRACTION10.265TORSIONAL
16P20081X-RAY DIFFRACTION10.265TORSIONAL
17S20081X-RAY DIFFRACTION10.265TORSIONAL
18V20081X-RAY DIFFRACTION10.265TORSIONAL
19Y20081X-RAY DIFFRACTION10.265TORSIONAL
110b20081X-RAY DIFFRACTION10.265TORSIONAL
21B10036X-RAY DIFFRACTION10.265TORSIONAL
22E10036X-RAY DIFFRACTION10.265TORSIONAL
23H10036X-RAY DIFFRACTION10.265TORSIONAL
24K10036X-RAY DIFFRACTION10.265TORSIONAL
25N10036X-RAY DIFFRACTION10.265TORSIONAL
26Q10036X-RAY DIFFRACTION10.265TORSIONAL
27T10036X-RAY DIFFRACTION10.265TORSIONAL
28W10036X-RAY DIFFRACTION10.265TORSIONAL
29Z10036X-RAY DIFFRACTION10.265TORSIONAL
210g10036X-RAY DIFFRACTION10.265TORSIONAL
31C10285X-RAY DIFFRACTION10.265TORSIONAL
32F10285X-RAY DIFFRACTION10.265TORSIONAL
33I10285X-RAY DIFFRACTION10.265TORSIONAL
34L10285X-RAY DIFFRACTION10.265TORSIONAL
35O10285X-RAY DIFFRACTION10.265TORSIONAL
36R10285X-RAY DIFFRACTION10.265TORSIONAL
37U10285X-RAY DIFFRACTION10.265TORSIONAL
38X10285X-RAY DIFFRACTION10.265TORSIONAL
39a10285X-RAY DIFFRACTION10.265TORSIONAL
310j10285X-RAY DIFFRACTION10.265TORSIONAL
LS精密化 シェル

Refine-ID: X-RAY DIFFRACTION / Rfactor Rfree error: 0

解像度 (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection Rwork% reflection obs (%)
3.606-3.64670.34952190.3388377389
3.6467-3.68950.37712400.35244216100
3.6895-3.73450.39522000.33984264100
3.7345-3.78180.33262180.3194232100
3.7818-3.83150.34762440.30724200100
3.8315-3.8840.37982500.31624239100
3.884-3.93950.38362250.32264236100
3.9395-3.99820.36292260.32424207100
3.9982-4.06070.3582240.31014245100
4.0607-4.12720.36712290.30534237100
4.1272-4.19830.32642130.28954225100
4.1983-4.27460.3321980.2764241100
4.2746-4.35680.32122100.27164278100
4.3568-4.44570.30752150.2734212100
4.4457-4.54230.28612550.23744216100
4.5423-4.64790.28562420.23964254100
4.6479-4.7640.28282010.21794212100
4.764-4.89270.2312440.21594234100
4.8927-5.03650.27782320.21894247100
5.0365-5.19890.26022110.21354272100
5.1989-5.38450.27562120.22554230100
5.3845-5.59980.28292370.2264250100
5.5998-5.85430.29132100.24254264100
5.8543-6.16240.27172150.23584244100
6.1624-6.54760.27652260.23574269100
6.5476-7.05180.28532320.22054261100
7.0518-7.7590.26482300.22434257100
7.759-8.8760.22782230.1854286100
8.876-11.1610.19342160.17664293100
11.161-49.0190.24512210.2451430798
精密化 TLS

手法: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.0410.05760.00750.3125-0.08860.2905-0.24230.3376-0.3427-0.3232-0.25930.07880.229-0.2407-0.45710.3641-0.04850.04210.4588-0.20210.4949-78.419317.5281-87.8262
20.3581-0.1386-0.1950.20060.00320.1581-0.03170.76-0.1514-0.1234-0.0613-0.09830.0894-0.2749-0.36340.21590.16520.0710.3673-0.53080.6477-78.432422.1104-89.2348
30.1170.1283-0.1330.0744-0.11810.18990.09060.05930.0817-0.1015-0.1358-0.0292-0.27110.5628-0.0320.31130.09730.14580.5035-0.04170.5092-55.258234.8641-78.525
40.5064-0.31420.25870.2561-0.07270.44490.01060.53020.0071-0.4186-0.0838-0.3238-0.0850.2206-0.62030.469-0.04190.17910.4256-0.22190.3734-57.733735.9782-82.0123
50.30710.2683-0.15780.33-0.1460.07340.00240.0718-0.42850.066-0.2507-0.18970.12440.031-0.38160.30580.02830.09410.4928-0.27810.2808-78.530425.3626-80.0405
60.00350.0022-0.00040.01120.00850.00650.0461-0.05760.0243-0.04620.098-0.0726-0.01180.033501.226-0.2527-0.16950.6817-0.29280.9595-72.90898.2228-108.7874
70.01430.01170.01780.01520.0530.06810.11610.04350.0419-0.0762-0.0285-0.0546-0.0559-0.13010.15320.8062-0.1275-0.03980.6137-0.39160.6356-86.662417.8808-90.7751
80.20120.0550.03990.07120.13640.2020.18160.3473-0.214-0.14440.03310.02560.10060.18490.10180.85660.0320.12660.5829-0.10340.3156-53.19244.08-107.6894
90.3641-0.07960.46940.1054-0.12230.5987-0.4010.15170.3131-0.1933-0.07140.002-0.3089-0.0669-0.53910.7640.0410.15460.5183-0.07520.3107-53.002356.449-93.1762
10-0.013-0.05980.03860.1259-0.0374-0.0029-0.05080.09810.2837-0.55250.0306-0.2791-0.57480.0528-0.02150.6595-0.00630.11640.51860.04780.2565-55.52460.825-91.7499
110.07080.09770.05830.06740.01340.20260.160.1480.0389-0.61440.06-0.2525-0.22650.07580.02760.51630.12130.08540.4866-0.02840.2837-51.9737.7052-88.7892
120.00550.0066-0.00150.01120.00610.0078-0.1654-0.0471-0.06330.0441-0.1695-0.05730.05940.05901.2180.10550.0731.021-0.02130.5636-51.338656.3075-127.8224
130.0301-0.03650.00030.0404-0.01650.03790.33230.09260.0994-0.2906-0.0499-0.01750.1220.142901.25350.08430.04190.9155-0.17020.4758-59.026139.0866-111.9544
140.17050.1537-0.11990.3035-0.2530.16740.15790.0908-0.0525-0.3845-0.1307-0.0456-0.26710.19990.21410.8702-0.0790.080.42530.15580.3502-68.432381.5483-100.4384
150.2816-0.0922-0.10350.04460.06610.0826-0.31860.07450.21810.09340.0892-0.19010.1421-0.12670.05311.08240.0470.07990.15650.12350.3302-66.511571.4638-68.4544
160.17220.0298-0.03010.017-0.0018-0.00080.0133-0.19630.2368-0.11010.2638-0.0596-0.2423-0.06130.00290.68580.0589-0.00670.30720.07510.5-75.65388.4221-76.2809
170.0734-0.1147-0.04140.10630.07440.0329-0.08550.10490.14650.0357-0.1371-0.2194-0.0878-0.2981-0.00010.6675-0.0314-0.01790.44870.05620.4373-75.095878.7459-75.548
180.5884-0.14550.06220.04820.1170.20530.08580.21780.17920.0525-0.13710.4565-0.2143-0.0384-0.00290.60370.0181-0.00690.30720.06150.4625-76.100571.2741-81.8459
190.12840.1058-0.16080.183-0.03930.1528-0.02260.1994-0.0691-0.44510.044-0.11850.02050.21430.01010.65070.0230.01190.42620.07710.351-58.089974.2842-91.692
200.061-0.1108-0.04120.35290.15690.06460.0198-0.07130.08160.1860.1861-0.0921-0.1263-0.05190.08111.3454-0.025-0.23340.78690.1920.2837-83.400898.1794-108.9524
210.0045-0.039-0.00580.05870.00090.0040.03490.2401-0.0207-0.1818-0.0206-0.11350.0381-0.00320.00131.04470.12510.12080.74570.15880.4147-68.346978.6407-108.6823
220.0643-0.0659-0.07140.16160.07960.13720.25440.1445-0.053-0.12930.12720.0972-0.1113-0.17180.12080.76140.1276-0.12620.39260.1330.4916-101.204880.2184-76.858
230.32630.0935-0.19830.3270.10590.47020.08150.54530.10910.05340.02040.22080.0153-0.3625-0.02390.57720.3422-0.0516-0.0271-0.09010.3778-99.800175.9113-78.4919
240.08310.0518-0.10880.0234-0.0640.09230.0666-0.1037-0.0047-0.1932-0.2411-0.019-0.2727-0.2159-0.00460.53460.00810.07680.2391-0.02010.6004-79.802460.6533-58.3027
250.00780.02340.03280.04290.0630.0766-0.0747-0.27650.10040.1965-0.1790.19370.4384-0.3219-0.00170.41030.05690.03360.36260.00730.3065-97.159363.9781-55.9145
260.218-0.0274-0.22960.0577-0.23420.3927-0.1245-0.12160.0015-0.16830.043-0.0037-0.0604-0.1425-00.55830.0669-0.10640.4037-0.01420.4672-89.876966.7082-69.394
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1130.02270.00130.02210.0024-0.00190.006-0.05690.0012-0.05610.0823-0.041-0.0034-0.26990.100900.924-0.1041-0.27480.6428-0.04161.71227.562396.8976-54.843
1140.0602-0.0377-0.01610.0402-0.01810.017-0.32950.1551-0.12250.2156-0.0905-0.146-0.03950.077401.0209-0.18810.19370.749-0.22470.89914.20686.2353-48.5859
1150.01340.00040.00480.00330.0109-0.00290.1369-0.1418-0.08870.09720.09320.0593-0.23070.06470.00010.752-0.21460.03611.2539-0.0320.8217.056299.4571-47.4659
1160.0252-0.0170.01580.0094-0.0090.00880.09650.0099-0.1115-0.0150.0523-0.0030.1380.016201.13940.0914-0.16761.1781-0.071.741416.007390.8894-48.8549
1170.32190.0419-0.07610.0720.01120.01860.165-0.37220.3691-0.26320.0456-0.0929-0.26130.08760.2440.57190.1116-0.0371-0.3983-0.40140.2039-72.627490.5756-32.044
1180.02330.00510.0335-0.0071-0.00810.0117-0.07280.02390.01010.24020.0426-0.0728-0.2822-0.105401.8228-0.72030.53941.7828-0.81572.3654-57.2868118.3921-13.1941
1190.15550.09090.01050.0270.01290.19890.102-0.02850.04820.0102-0.0170.11340.06040.30210.00670.1458-0.5604-0.0279-0.4683-0.26260.3443-50.432492.0435-38.4555
1200.08810.01540.00330.0285-0.02080.0897-0.25350.12240.21890.15640.1830.0474-0.00760.3665-0.02072.0554-0.71080.29961.62-0.69091.529-46.2997109.8875-6.3939
1210.04970.02090.04050.01280.01330.0470.0163-0.03770.02060.056-0.0048-0.03830.0443-0.18170.08760.51840.11140.32860.49080.03880.4907-88.539240.7379-14.8012
1220.07170.05020.04510.3116-0.15690.13160.0718-0.1585-0.1243-0.03260.1046-0.1255-0.11580.17130.0360.12870.06140.10560.3125-0.040.2489-82.361745.2292-26.2756
1230.1662-0.2318-0.03710.3073-0.15660.09070.1092-0.21060.0563-0.05880.0579-0.326-0.273-0.38940.02480.38750.00160.02860.672-0.07980.3133-81.534846.7461-8.1573
1240.0478-0.00980.02710.0212-0.03280.04190.1187-0.4329-0.0535-0.16590.21160.3329-0.0259-0.30650.00220.7588-0.09210.02940.8261-0.01550.3894-85.984154.471713.8618
1250.1456-0.05050.02740.15150.01570.0141-0.1135-0.02950.2046-0.021-0.33510.0286-0.02260.1626-0.03580.60920.08830.07840.3853-0.09270.3526-69.843565.1253-14.2126
1260.07560.0879-0.03650.1603-0.2080.4056-0.0961-0.1303-0.0770.0492-0.2369-0.0859-0.06870.1717-0.38060.3416-0.11050.1740.471-0.16460.1571-70.701863.198-23.1873
127-0.00620.02940.00530.021-0.01710.03680.0077-0.0740.08660.142-0.28760.3062-0.1769-0.0047-0.52280.38270.04790.03190.1911-0.17550.1226-76.927765.1466-19.0367
128-0.0037-0.00010.00930.0014-0.0120.0003-0.04-0.3009-0.35540.00120.05970.0228-0.0077-0.0258-01.07620.13520.01911.11250.00820.6281-74.499454.58918.64
1290.00930.00310.00830.00980.01080.0095-0.0461-0.1824-0.0661-0.1138-0.1086-0.0163-0.0949-0.0312-01.3849-0.24980.0141.17910.02850.6985-64.888261.42788.9893
1300.01130.0022-0.01240.01360.00190.01160.0802-0.11760.01080.03530.0159-0.04540.07740.082700.81110.03390.05841.2241-0.17580.6219-70.491258.28668.1703
1310.08740.01830.1261-0.00260.01490.1827-0.1787-0.12960.1751-0.018-0.0294-0.1855-0.00810.2062-0.21020.9645-0.1497-0.43741.0245-0.03990.5349-65.999856.119219.2297
1320.0304-0.0135-0.0050.00650.00020.0026-0.059-0.07750.2163-0.0081-0.0128-0.12460.1173-0.021600.59460.06290.16910.8941-0.19530.739733.2109-56.5726-76.0554
1330.01360.0422-0.00440.1898-0.0024-0.0009-0.0879-0.1017-0.0797-0.22960.1787-0.2123-0.01850.07850.00710.39130.1436-0.03410.90850.13460.436526.1137-51.3735-68.284
1340.0777-0.0624-0.02830.06060.0180.00680.1130.0934-0.0368-0.0578-0.12350.0051-0.0463-0.0479-0.02050.51730.4740.08170.54690.25980.390819.1925-57.6628-68.0416
1350.0527-0.0037-0.03730.02740.02170.02850.13690.00920.0295-0.1165-0.0218-0.08760.05750.12840.10260.38280.56050.22811.20750.04150.456327.2963-57.3979-73.0896
1360.11150.0516-0.12690.12640.06870.17580.09530.26360.07290.23810.07850.055-0.11890.1796-0.08080.46190.22910.61790.72710.04270.856127.9183-50.6231-75.808
1370.01280.01110.01650.0075-0.00250.0089-0.3141-0.09690.1868-0.3395-0.04450.0564-0.19750.1587-01.38650.26990.15161.2370.46581.298338.3697-40.4054-105.2616
1380.00450.00190.00260.0059-0.00830.0116-0.1150.0545-0.03910.022-0.09280.04080.13240.044801.7171-0.15430.09631.38030.40361.187629.7837-46.64-98.5992
1390.0111-0.00290.0030.0270.0210.0138-0.02350.24180.09310.3354-0.0196-0.09130.16830.0381-01.46110.03660.56331.43180.4381.148242.3575-41.481-105.1787
1400.0462-0.03060.02970.04360.00730.0189-0.0875-0.06420.0624-0.28490.14280.2716-0.0811-0.0645-0.00240.83440.0440.24240.72940.19610.543412.1436-35.2893-77.1614
1410.07160.0142-0.05320.3082-0.05880.00020.16330.6766-0.4373-1.0252-0.0666-0.26450.01470.35630.09610.78250.44270.04550.38730.5513-0.568322.1988-37.917-95.7814
1420.0021-0.0159-0.00370.06720.0040.0127-0.0667-0.04840.10580.07980.0697-0.1390.00960.014200.76490.23260.06160.60660.13111.1879-10.2577-95.1373-62.5791
1430.01390.0048-0.0070.0296-0.00130.00420.0569-0.0098-0.4226-0.2248-0.09540.1289-0.14110.1109-00.83170.2206-0.03070.56380.02520.3545-6.0215-85.0095-58.3789
1440.094-0.0292-0.00490.04010.01180.0015-0.1619-0.11980.00030.03340.1031-0.01820.0568-0.00970.02890.68070.3093-0.14440.2602-0.11480.3074-11.1499-79.5611-55.1976
1450.0645-0.0199-0.08550.04230.00030.1325-0.1144-0.1042-0.00170.1627-0.03380.18540.09020.0676-0.01261.03180.44370.00740.35960.01120.7274-15.8504-87.0225-57.8418
1460.0309-0.0207-0.05090.02230.04960.07260.3381-0.04220.0854-0.05490.4375-0.159-0.10290.02210.00910.93060.1993-0.00360.70530.03170.8816-7.4636-88.1589-65.6609
1470.0047-0.005-0.00780.0149-0.00170.00160.06230.0556-0.059-0.07510.25150.0718-0.0626-0.0016-01.0040.32820.04570.87850.13941.0580.8537-105.6261-97.1809
1480.0096-0.01770.0068-0.0037-0.00940.0229-0.0837-0.0505-0.15560.1037-0.413-0.09650.302-0.0603-0.00010.97510.1750.07011.0799-0.17180.96640.6767-105.8932-87.6146
1490.0060.0119-0.00260.0294-0.01850.0177-0.1297-0.03350.0073-0.1741-0.0501-0.00410.0214-0.10430.00170.31480.267-0.01981.07410.14370.72971.7462-72.253-79.2799
1500.23640.22610.03080.30290.06290.02030.07950.07570.16140.00690.00660.07230.07620.1408-0.12350.07460.66730.22530.2177-0.03870.10724.2615-72.8512-69.3532
1510.0117-0.01470.0380.0104-0.00890.01540.05040.0237-0.1279-0.0430.2130.0809-0.15210.126201.22130.1409-0.08311.08420.05440.80091.2552-95.7364-95.5638
1520.0623-0.0218-0.0210.05190.05220.0382-0.14210.13650.1073-0.41390.22950.2480.1944-0.15930.00541.31250.3006-0.14581.27760.00220.5372-3.9194-94.0961-101.1076
1530.0234-0.0005-0.0330.0314-0.03810.0635-0.09470.12790.1347-0.1001-0.10620.3653-0.09670.0048-0.09610.2947-0.0101-0.12360.23870.01930.7717-48.7316-62.1762-42.8325
1540.01050.00520.0040.00210.0330.00820.1569-0.3424-0.23070.0366-0.09930.21720.0419-0.19930.07270.33040.0481-0.27920.516-0.08621.1973-51.4489-61.9401-46.0761
1550.0102-0.0022-0.00240.0018-0.00680.01410.0021-0.0973-0.08650.0163-0.09870.0458-0.0787-0.013701.3265-0.29230.18561.089-0.50591.3004-70.2177-91.9836-62.5515
1560.0007-0.00810.00220.01280.01770.01390.0649-0.19050.1427-0.00510.0298-0.0160.11970.075201.4346-0.2239-0.11521.1061-0.13571.0081-63.5621-82.2958-56.2508
1570.0356-0.00350.02250.0107-0.01620.0269-0.321-0.04890.1245-0.0488-0.10930.00710.2954-0.016-01.2127-0.04380.230.7804-0.20131.364-69.4346-89.6635-54.7512
15800.00690.01370.00190.02110.02630.01370.37040.1728-0.086-0.1629-0.02550.04030.0222-00.6740.15580.03830.4829-0.03640.4947-34.4706-70.3198-61.583
1590.0142-0.0124-0.0018-0.0023-0.00950.01740.00710.0072-0.12990.1082-0.02510.28780.1540.0014-0.0690.55570.3315-0.1877-0.0403-0.22330.5581-34.8212-73.4175-54.4507
1600.0202-0.0266-0.00820.0446-0.02810.0630.17460.15760.04950.05570.24-0.02790.0356-0.20590.00011.2959-0.1702-0.02231.4121-0.20531.0976-61.4875-86.3308-70.2456
161-0.0011-0.01540.01890.1437-0.11870.0892-0.08260.22920.0431-0.1203-0.2137-0.15170.0736-0.1525-0.03181.277-0.1915-0.46811.1182-0.33750.9904-70.4028-88.9377-75.6933
1620.20160.08690.0130.1321-0.08670.2456-0.4516-0.18770.06280.1842-0.0617-0.00650.1037-0.0783-0.21530.37380.09460.10650.1818-0.25190.8316-44.6131-6.9701-46.0417
1630.4723-0.0701-0.03280.01740.00640.00250.14320.26290.16010.1752-0.2789-0.0173-0.1501-0.1046-0.18340.58630.1351-0.17150.1344-0.11780.1166-39.0831-16.9665-43.208
1640.17540.1462-0.09780.1364-0.07460.1424-0.1032-0.1448-0.0082-0.1241-0.0403-0.00310.03640.0931-0.18670.32360.1246-0.03880.1962-0.05270.4234-31.3441-15.8862-48.1638
1650.0277-0.00970.0008-0.0012-0.002-0.0002-0.06130.0175-0.12280.02890.00580.04350.0306-0.0184-0.05540.48210.4647-0.01040.4311-0.1830.3499-35.9242-7.3916-43.7741
1660.0198-0.0155-0.00950.00940.00410.0046-0.20430.0685-0.04380.08520.04390.10630.05010.0756-0.00410.53150.0163-0.2570.5436-0.06410.5553-42.9127-14.1741-51.6955
167-0.0013-0.00360.00140.0114-0.01210.00820.1161-0.0984-0.05980.056-0.1916-0.04850.0215-0.0564-0.00010.5640.0481-0.06490.3583-0.04580.7908-39.7164-24.3045-40.8567
1680.18550.1855-0.00430.12870.10810.3496-0.1161-0.0335-0.22970.0103-0.16040.7920.2667-0.1905-0.1280.56160.1277-0.35080.3286-0.15461.1271-70.6967-7.7711-61.6039
1690.07830.0260.02730.1210.13390.13820.0575-0.001-0.0584-0.0660.17730.06810.00050.03720.15190.7952-0.014-0.35040.4771-0.02720.2525-46.2343-32.7569-60.441
1700.01740.00420.02330.01630.00920.02650.01130.0533-0.0031-0.0172-0.12660.0356-0.03950.0823-0.06370.3592-0.0501-0.48040.3713-0.0080.854-51.7778-40.2445-55.3801
1710.05820.02310.09530.02460.07830.1336-0.1975-0.1107-0.04540.0034-0.07740.0714-0.0455-0.0174-0.3034-0.07210.5004-0.2493-0.4460.14180.4782-44.7146-34.9301-47.3839
1720.1296-0.0721-0.20050.06730.11250.28360.09930.0181-0.1432-0.5217-0.08070.2077-0.34610.06610.0110.66990.064-0.50990.257-0.24580.4156-60.0657-23.5506-61.0289
1730.028-0.0330.08760.0691-0.08520.1968-0.09120.4019-0.0358-0.1946-0.2299-0.09980.047-0.0775-0.00740.94250.0576-0.39880.5474-0.17720.7068-65.8366-21.4373-72.1061
1740.2539-0.1286-0.06230.1145-0.01540.057-0.00390.2410.16320.00970.0137-0.00230.068-0.00260.05111.1117-0.2393-0.52830.6603-0.031.0025-68.0313-9.2609-77.7467
1750.04590.02210.01340.03030.03630.05450.00920.14280.06240.0269-0.01090.01320.142-0.1496-0.03161.3501-0.1099-0.99680.7879-0.15620.931-75.1908-19.0982-80.376
1760.10240.0172-0.05190.0758-0.04180.0279-0.12030.0890.148-0.1352-0.0935-0.31980.28910.172-0.18980.23850.0660.08370.2550.16290.23418.8685-10.6765-63.0752
1770.0975-0.06820.01620.0468-0.00560.00210.0765-0.00230.13960.2592-0.0263-0.05280.0152-0.0170.07430.9369-0.08120.23520.42910.08730.19643.4059-6.2417-67.2308
1780.0188-0.026-0.01290.02810.00810.0121-0.1411-0.0550.13040.0175-0.10.0767-0.1657-0.081201.0623-0.10370.00250.96530.1691.3839-8.513516.0947-88.2546
1790.0017-0.0008-0.01990.01330.03580.07950.0936-0.02680.2137-0.12860.0054-0.0009-0.1590.54150.0091.27730.24560.16770.79260.33531.283-5.611915.8041-87.3717
1800.1409-0.0563-0.0580.2819-0.06590.0531-0.1628-0.2636-0.12580.0965-0.44830.02110.1562-0.1088-0.03240.77820.08480.02240.4255-0.08120.3638-18.6407-10.9371-69.7598
1810.0587-0.0610.04960.0837-0.04860.08630.07740.0843-0.1322-0.0918-0.14180.0426-0.11970.1033-0.08090.50950.0426-0.17720.14890.18420.4389-15.464-15.9314-62.672
1820.02120.0142-0.02820.0505-0.0270.0773-0.2747-0.05030.12460.0809-0.0766-0.0749-0.02850.0695-0.05520.29830.0665-0.01640.35550.09550.3911-12.215-6.2757-55.726
1831.03580.3246-0.50540.5196-0.15480.2434-0.2974-0.1701-0.1464-0.1645-0.1718-0.1117-0.23160.1131-0.14150.5757-0.0171-0.0980.3117-0.01110.2843-18.2005-9.3169-61.3772
1840.0479-0.1281-0.05110.36320.0570.1378-0.0287-0.0379-0.18960.0732-0.1202-0.08650.0023-0.0415-0.03680.78620.1175-0.05930.13030.00860.44-6.163-18.6174-64.1901
1850.08210.0121-0.03810.03890.04060.07420.05520.13270.03640.00430.01720.00160.04610.0120.03380.53560.36150.06810.5159-0.35640.3824-25.17543.0831-75.7129
1860.0489-0.0956-0.06150.24260.13860.0807-0.01390.11990.0838-0.0405-0.2035-0.00530.06340.092-0.05550.4567-0.2501-0.16681.37460.40480.6264-11.306811.3652-95.8947
1870.0322-0.0084-0.00070.0369-0.03280.0215-0.12180.3224-0.01240.2337-0.0427-0.0447-0.01350.13101.03470.089-0.11870.9319-0.16020.4542-17.7241.7876-90.2893
1880.0077-0.00040.0030.0138-0.00290.0018-0.07970.1385-0.06040.26390.0847-0.06510.02750.061600.48790.2864-0.120.79120.12060.7867-9.32265.2791-100.3416
1890.02340.0166-0.00560.0185-0.0009-0.0002-0.00720.15330.0673-0.1896-0.1576-0.0592-0.0047-0.0418-0.02640.8366-0.06980.01411.17980.29410.5665-21.53687.6057-100.9169
精密化 TLSグループ
IDRefine-IDRefine TLS-IDSelection detailsAuth asym-IDAuth seq-ID
1X-RAY DIFFRACTION1chain 'A' and (resid 12 through 77 )A12 - 77
2X-RAY DIFFRACTION2chain 'A' and (resid 78 through 115 )A78 - 115
3X-RAY DIFFRACTION3chain 'A' and (resid 116 through 170 )A116 - 170
4X-RAY DIFFRACTION4chain 'A' and (resid 171 through 295 )A171 - 295
5X-RAY DIFFRACTION5chain 'A' and (resid 296 through 370 )A296 - 370
6X-RAY DIFFRACTION6chain 'A' and (resid 371 through 427 )A371 - 427
7X-RAY DIFFRACTION7chain 'A' and (resid 428 through 460 )A428 - 460
8X-RAY DIFFRACTION8chain 'D' and (resid 12 through 77 )D12 - 77
9X-RAY DIFFRACTION9chain 'D' and (resid 78 through 170 )D78 - 170
10X-RAY DIFFRACTION10chain 'D' and (resid 171 through 324 )D171 - 324
11X-RAY DIFFRACTION11chain 'D' and (resid 325 through 370 )D325 - 370
12X-RAY DIFFRACTION12chain 'D' and (resid 371 through 427 )D371 - 427
13X-RAY DIFFRACTION13chain 'D' and (resid 428 through 460 )D428 - 460
14X-RAY DIFFRACTION14chain 'G' and (resid 12 through 115 )G12 - 115
15X-RAY DIFFRACTION15chain 'G' and (resid 116 through 149 )G116 - 149
16X-RAY DIFFRACTION16chain 'G' and (resid 150 through 198 )G150 - 198
17X-RAY DIFFRACTION17chain 'G' and (resid 199 through 266 )G199 - 266
18X-RAY DIFFRACTION18chain 'G' and (resid 267 through 313 )G267 - 313
19X-RAY DIFFRACTION19chain 'G' and (resid 314 through 370 )G314 - 370
20X-RAY DIFFRACTION20chain 'G' and (resid 371 through 427 )G371 - 427
21X-RAY DIFFRACTION21chain 'G' and (resid 428 through 460 )G428 - 460
22X-RAY DIFFRACTION22chain 'J' and (resid 12 through 77 )J12 - 77
23X-RAY DIFFRACTION23chain 'J' and (resid 78 through 115 )J78 - 115
24X-RAY DIFFRACTION24chain 'J' and (resid 116 through 149 )J116 - 149
25X-RAY DIFFRACTION25chain 'J' and (resid 150 through 217 )J150 - 217
26X-RAY DIFFRACTION26chain 'J' and (resid 218 through 370 )J218 - 370
27X-RAY DIFFRACTION27chain 'J' and (resid 371 through 427 )J371 - 427
28X-RAY DIFFRACTION28chain 'J' and (resid 428 through 460 )J428 - 460
29X-RAY DIFFRACTION29chain 'M' and (resid 12 through 115 )M12 - 115
30X-RAY DIFFRACTION30chain 'M' and (resid 116 through 149 )M116 - 149
31X-RAY DIFFRACTION31chain 'M' and (resid 150 through 236 )M150 - 236
32X-RAY DIFFRACTION32chain 'M' and (resid 237 through 298 )M237 - 298
33X-RAY DIFFRACTION33chain 'M' and (resid 299 through 370 )M299 - 370
34X-RAY DIFFRACTION34chain 'M' and (resid 371 through 427 )M371 - 427
35X-RAY DIFFRACTION35chain 'M' and (resid 428 through 460 )M428 - 460
36X-RAY DIFFRACTION36chain 'P' and (resid 12 through 115 )P12 - 115
37X-RAY DIFFRACTION37chain 'P' and (resid 116 through 149 )P116 - 149
38X-RAY DIFFRACTION38chain 'P' and (resid 150 through 170 )P150 - 170
39X-RAY DIFFRACTION39chain 'P' and (resid 171 through 295 )P171 - 295
40X-RAY DIFFRACTION40chain 'P' and (resid 296 through 370 )P296 - 370
41X-RAY DIFFRACTION41chain 'P' and (resid 371 through 427 )P371 - 427
42X-RAY DIFFRACTION42chain 'P' and (resid 428 through 460 )P428 - 460
43X-RAY DIFFRACTION43chain 'S' and (resid 12 through 115 )S12 - 115
44X-RAY DIFFRACTION44chain 'S' and (resid 116 through 170 )S116 - 170
45X-RAY DIFFRACTION45chain 'S' and (resid 171 through 370 )S171 - 370
46X-RAY DIFFRACTION46chain 'S' and (resid 371 through 427 )S371 - 427
47X-RAY DIFFRACTION47chain 'S' and (resid 428 through 460 )S428 - 460
48X-RAY DIFFRACTION48chain 'V' and (resid 12 through 77 )V12 - 77
49X-RAY DIFFRACTION49chain 'V' and (resid 78 through 115 )V78 - 115
50X-RAY DIFFRACTION50chain 'V' and (resid 116 through 170 )V116 - 170
51X-RAY DIFFRACTION51chain 'V' and (resid 171 through 217 )V171 - 217
52X-RAY DIFFRACTION52chain 'V' and (resid 218 through 279 )V218 - 279
53X-RAY DIFFRACTION53chain 'V' and (resid 280 through 324 )V280 - 324
54X-RAY DIFFRACTION54chain 'V' and (resid 325 through 370 )V325 - 370
55X-RAY DIFFRACTION55chain 'V' and (resid 371 through 427 )V371 - 427
56X-RAY DIFFRACTION56chain 'V' and (resid 428 through 460 )V428 - 460
57X-RAY DIFFRACTION57chain 'Y' and (resid 12 through 115 )Y12 - 115
58X-RAY DIFFRACTION58chain 'Y' and (resid 116 through 149 )Y116 - 149
59X-RAY DIFFRACTION59chain 'Y' and (resid 150 through 170 )Y150 - 170
60X-RAY DIFFRACTION60chain 'Y' and (resid 171 through 370 )Y171 - 370
61X-RAY DIFFRACTION61chain 'Y' and (resid 371 through 427 )Y371 - 427
62X-RAY DIFFRACTION62chain 'Y' and (resid 428 through 460 )Y428 - 460
63X-RAY DIFFRACTION63chain 'b' and (resid 12 through 77 )b12 - 77
64X-RAY DIFFRACTION64chain 'b' and (resid 78 through 115 )b78 - 115
65X-RAY DIFFRACTION65chain 'b' and (resid 116 through 149 )b116 - 149
66X-RAY DIFFRACTION66chain 'b' and (resid 150 through 170 )b150 - 170
67X-RAY DIFFRACTION67chain 'b' and (resid 171 through 251 )b171 - 251
68X-RAY DIFFRACTION68chain 'b' and (resid 252 through 279 )b252 - 279
69X-RAY DIFFRACTION69chain 'b' and (resid 280 through 324 )b280 - 324
70X-RAY DIFFRACTION70chain 'b' and (resid 325 through 370 )b325 - 370
71X-RAY DIFFRACTION71chain 'b' and (resid 371 through 427 )b371 - 427
72X-RAY DIFFRACTION72chain 'b' and (resid 428 through 460 )b428 - 460
73X-RAY DIFFRACTION73chain 'B' and (resid 1 through 20 )B1 - 20
74X-RAY DIFFRACTION74chain 'B' and (resid 21 through 43 )B21 - 43
75X-RAY DIFFRACTION75chain 'B' and (resid 44 through 87 )B44 - 87
76X-RAY DIFFRACTION76chain 'B' and (resid 88 through 99 )B88 - 99
77X-RAY DIFFRACTION77chain 'B' and (resid 100 through 152 )B100 - 152
78X-RAY DIFFRACTION78chain 'B' and (resid 153 through 169 )B153 - 169
79X-RAY DIFFRACTION79chain 'B' and (resid 170 through 180 )B170 - 180
80X-RAY DIFFRACTION80chain 'B' and (resid 181 through 218 )B181 - 218
81X-RAY DIFFRACTION81chain 'C' and (resid 1 through 17 )C1 - 17
82X-RAY DIFFRACTION82chain 'C' and (resid 18 through 38 )C18 - 38
83X-RAY DIFFRACTION83chain 'C' and (resid 39 through 61 )C39 - 61
84X-RAY DIFFRACTION84chain 'C' and (resid 62 through 90 )C62 - 90
85X-RAY DIFFRACTION85chain 'C' and (resid 91 through 139 )C91 - 139
86X-RAY DIFFRACTION86chain 'C' and (resid 140 through 172 )C140 - 172
87X-RAY DIFFRACTION87chain 'C' and (resid 173 through 188 )C173 - 188
88X-RAY DIFFRACTION88chain 'C' and (resid 189 through 214 )C189 - 214
89X-RAY DIFFRACTION89chain 'E' and (resid 1 through 20 )E1 - 20
90X-RAY DIFFRACTION90chain 'E' and (resid 21 through 43 )E21 - 43
91X-RAY DIFFRACTION91chain 'E' and (resid 44 through 71 )E44 - 71
92X-RAY DIFFRACTION92chain 'E' and (resid 72 through 152 )E72 - 152
93X-RAY DIFFRACTION93chain 'E' and (resid 153 through 218 )E153 - 218
94X-RAY DIFFRACTION94chain 'F' and (resid 1 through 76 )F1 - 76
95X-RAY DIFFRACTION95chain 'F' and (resid 77 through 102 )F77 - 102
96X-RAY DIFFRACTION96chain 'F' and (resid 103 through 113 )F103 - 113
97X-RAY DIFFRACTION97chain 'F' and (resid 114 through 150 )F114 - 150
98X-RAY DIFFRACTION98chain 'F' and (resid 151 through 172 )F151 - 172
99X-RAY DIFFRACTION99chain 'F' and (resid 173 through 188 )F173 - 188
100X-RAY DIFFRACTION100chain 'F' and (resid 189 through 214 )F189 - 214
101X-RAY DIFFRACTION101chain 'H' and (resid 1 through 20 )H1 - 20
102X-RAY DIFFRACTION102chain 'H' and (resid 21 through 43 )H21 - 43
103X-RAY DIFFRACTION103chain 'H' and (resid 44 through 71 )H44 - 71
104X-RAY DIFFRACTION104chain 'H' and (resid 72 through 87 )H72 - 87
105X-RAY DIFFRACTION105chain 'H' and (resid 88 through 99 )H88 - 99
106X-RAY DIFFRACTION106chain 'H' and (resid 100 through 152 )H100 - 152
107X-RAY DIFFRACTION107chain 'H' and (resid 153 through 200 )H153 - 200
108X-RAY DIFFRACTION108chain 'H' and (resid 201 through 218 )H201 - 218
109X-RAY DIFFRACTION109chain 'I' and (resid 1 through 38 )I1 - 38
110X-RAY DIFFRACTION110chain 'I' and (resid 39 through 61 )I39 - 61
111X-RAY DIFFRACTION111chain 'I' and (resid 62 through 102 )I62 - 102
112X-RAY DIFFRACTION112chain 'I' and (resid 103 through 113 )I103 - 113
113X-RAY DIFFRACTION113chain 'I' and (resid 114 through 139 )I114 - 139
114X-RAY DIFFRACTION114chain 'I' and (resid 140 through 172 )I140 - 172
115X-RAY DIFFRACTION115chain 'I' and (resid 173 through 188 )I173 - 188
116X-RAY DIFFRACTION116chain 'I' and (resid 189 through 214 )I189 - 214
117X-RAY DIFFRACTION117chain 'K' and (resid 1 through 126 )K1 - 126
118X-RAY DIFFRACTION118chain 'K' and (resid 127 through 218 )K127 - 218
119X-RAY DIFFRACTION119chain 'L' and (resid 1 through 113 )L1 - 113
120X-RAY DIFFRACTION120chain 'L' and (resid 114 through 214 )L114 - 214
121X-RAY DIFFRACTION121chain 'N' and (resid 1 through 20 )N1 - 20
122X-RAY DIFFRACTION122chain 'N' and (resid 21 through 60 )N21 - 60
123X-RAY DIFFRACTION123chain 'N' and (resid 61 through 152 )N61 - 152
124X-RAY DIFFRACTION124chain 'N' and (resid 153 through 218 )N153 - 218
125X-RAY DIFFRACTION125chain 'O' and (resid 1 through 17 )O1 - 17
126X-RAY DIFFRACTION126chain 'O' and (resid 18 through 38 )O18 - 38
127X-RAY DIFFRACTION127chain 'O' and (resid 39 through 113 )O39 - 113
128X-RAY DIFFRACTION128chain 'O' and (resid 114 through 139 )O114 - 139
129X-RAY DIFFRACTION129chain 'O' and (resid 140 through 150 )O140 - 150
130X-RAY DIFFRACTION130chain 'O' and (resid 151 through 172 )O151 - 172
131X-RAY DIFFRACTION131chain 'O' and (resid 173 through 214 )O173 - 214
132X-RAY DIFFRACTION132chain 'g' and (resid 1 through 20 )g1 - 20
133X-RAY DIFFRACTION133chain 'g' and (resid 21 through 43 )g21 - 43
134X-RAY DIFFRACTION134chain 'g' and (resid 44 through 71 )g44 - 71
135X-RAY DIFFRACTION135chain 'g' and (resid 72 through 99 )g72 - 99
136X-RAY DIFFRACTION136chain 'g' and (resid 100 through 126 )g100 - 126
137X-RAY DIFFRACTION137chain 'g' and (resid 127 through 169 )g127 - 169
138X-RAY DIFFRACTION138chain 'g' and (resid 170 through 180 )g170 - 180
139X-RAY DIFFRACTION139chain 'g' and (resid 181 through 218 )g181 - 218
140X-RAY DIFFRACTION140chain 'j' and (resid 1 through 38 )j1 - 38
141X-RAY DIFFRACTION141chain 'j' and (resid 39 through 214 )j39 - 214
142X-RAY DIFFRACTION142chain 'Q' and (resid 1 through 20 )Q1 - 20
143X-RAY DIFFRACTION143chain 'Q' and (resid 21 through 43 )Q21 - 43
144X-RAY DIFFRACTION144chain 'Q' and (resid 44 through 60 )Q44 - 60
145X-RAY DIFFRACTION145chain 'Q' and (resid 61 through 87 )Q61 - 87
146X-RAY DIFFRACTION146chain 'Q' and (resid 88 through 126 )Q88 - 126
147X-RAY DIFFRACTION147chain 'Q' and (resid 127 through 152 )Q127 - 152
148X-RAY DIFFRACTION148chain 'Q' and (resid 153 through 218 )Q153 - 218
149X-RAY DIFFRACTION149chain 'R' and (resid 1 through 17 )R1 - 17
150X-RAY DIFFRACTION150chain 'R' and (resid 18 through 102 )R18 - 102
151X-RAY DIFFRACTION151chain 'R' and (resid 103 through 128 )R103 - 128
152X-RAY DIFFRACTION152chain 'R' and (resid 129 through 214 )R129 - 214
153X-RAY DIFFRACTION153chain 'T' and (resid 1 through 60 )T1 - 60
154X-RAY DIFFRACTION154chain 'T' and (resid 61 through 126 )T61 - 126
155X-RAY DIFFRACTION155chain 'T' and (resid 127 through 152 )T127 - 152
156X-RAY DIFFRACTION156chain 'T' and (resid 153 through 180 )T153 - 180
157X-RAY DIFFRACTION157chain 'T' and (resid 181 through 218 )T181 - 218
158X-RAY DIFFRACTION158chain 'U' and (resid 1 through 38 )U1 - 38
159X-RAY DIFFRACTION159chain 'U' and (resid 39 through 102 )U39 - 102
160X-RAY DIFFRACTION160chain 'U' and (resid 103 through 172 )U103 - 172
161X-RAY DIFFRACTION161chain 'U' and (resid 173 through 214 )U173 - 214
162X-RAY DIFFRACTION162chain 'W' and (resid 1 through 20 )W1 - 20
163X-RAY DIFFRACTION163chain 'W' and (resid 21 through 43 )W21 - 43
164X-RAY DIFFRACTION164chain 'W' and (resid 44 through 71 )W44 - 71
165X-RAY DIFFRACTION165chain 'W' and (resid 72 through 87 )W72 - 87
166X-RAY DIFFRACTION166chain 'W' and (resid 88 through 99 )W88 - 99
167X-RAY DIFFRACTION167chain 'W' and (resid 100 through 113 )W100 - 113
168X-RAY DIFFRACTION168chain 'W' and (resid 114 through 218 )W114 - 218
169X-RAY DIFFRACTION169chain 'X' and (resid 1 through 13 )X1 - 13
170X-RAY DIFFRACTION170chain 'X' and (resid 14 through 25 )X14 - 25
171X-RAY DIFFRACTION171chain 'X' and (resid 26 through 75 )X26 - 75
172X-RAY DIFFRACTION172chain 'X' and (resid 76 through 139 )X76 - 139
173X-RAY DIFFRACTION173chain 'X' and (resid 140 through 172 )X140 - 172
174X-RAY DIFFRACTION174chain 'X' and (resid 173 through 188 )X173 - 188
175X-RAY DIFFRACTION175chain 'X' and (resid 189 through 214 )X189 - 214
176X-RAY DIFFRACTION176chain 'Z' and (resid 1 through 87 )Z1 - 87
177X-RAY DIFFRACTION177chain 'Z' and (resid 88 through 126 )Z88 - 126
178X-RAY DIFFRACTION178chain 'Z' and (resid 127 through 169 )Z127 - 169
179X-RAY DIFFRACTION179chain 'Z' and (resid 170 through 218 )Z170 - 218
180X-RAY DIFFRACTION180chain 'a' and (resid 1 through 17 )a1 - 17
181X-RAY DIFFRACTION181chain 'a' and (resid 18 through 38 )a18 - 38
182X-RAY DIFFRACTION182chain 'a' and (resid 39 through 61 )a39 - 61
183X-RAY DIFFRACTION183chain 'a' and (resid 62 through 90 )a62 - 90
184X-RAY DIFFRACTION184chain 'a' and (resid 91 through 102 )a91 - 102
185X-RAY DIFFRACTION185chain 'a' and (resid 103 through 113 )a103 - 113
186X-RAY DIFFRACTION186chain 'a' and (resid 114 through 139 )a114 - 139
187X-RAY DIFFRACTION187chain 'a' and (resid 140 through 172 )a140 - 172
188X-RAY DIFFRACTION188chain 'a' and (resid 173 through 188 )a173 - 188
189X-RAY DIFFRACTION189chain 'a' and (resid 189 through 214 )a189 - 214

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万見について

-
お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る