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- PDB-7dwg: Crystal structure of a glutathione S-transferase mutant SbGSTU7(T... -
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Open data
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Basic information
Entry | Database: PDB / ID: 7dwg | ||||||
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Title | Crystal structure of a glutathione S-transferase mutant SbGSTU7(T53I) from Salix babylonica in complex with glutathione | ||||||
![]() | Glutathione S-transferase | ||||||
![]() | TRANSFERASE / Enzyme / Complex | ||||||
Function / homology | ![]() response to chemical / glutathione transferase / glutathione transferase activity / glutathione metabolic process / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Zhuge, X.L. / Yang, H.L. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Crystal structure of a glutathione S-transferase mutant SbGSTU7(T53I) from Salix babylonica in complex with glutathione Authors: Zhuge, X.L. / Yang, H.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 64.2 KB | Display | ![]() |
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PDB format | ![]() | 43.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 711.7 KB | Display | ![]() |
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Full document | ![]() | 715.3 KB | Display | |
Data in XML | ![]() | 12.4 KB | Display | |
Data in CIF | ![]() | 17.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7dweS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 25625.475 Da / Num. of mol.: 1 / Mutation: T53I Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Chemical | ChemComp-GSH / |
#3: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.73 Å3/Da / Density % sol: 54.9 % |
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Crystal grow | Temperature: 289.15 K / Method: vapor diffusion, hanging drop / pH: 7.4 / Details: HEPES sodium, PEG 400, Ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Dec 1, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.987 Å / Relative weight: 1 |
Reflection | Resolution: 1.67→35.34 Å / Num. obs: 34121 / % possible obs: 99.84 % / Redundancy: 1 % / Biso Wilson estimate: 29.49 Å2 / CC1/2: 1 / Net I/σ(I): 2.69 |
Reflection shell | Resolution: 1.67→1.73 Å / Num. unique obs: 3335 / CC1/2: 1 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 7DWE Resolution: 1.67→35.34 Å / SU ML: 0.1489 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 22.5517 Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.29 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.67→35.34 Å
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Refine LS restraints |
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LS refinement shell |
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