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Open data
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Basic information
Entry | Database: PDB / ID: 6wue | ||||||
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Title | Tetragonal crystal form of SbtB from Synechocystis PCC6803 | ||||||
![]() | Membrane-associated protein slr1513 | ||||||
![]() | SIGNALING PROTEIN / Regulator of cyanobacterial bicarbonate transporter | ||||||
Function / homology | Nitrogen regulatory PII-like, alpha/beta / Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal / plasma membrane-derived thylakoid membrane / ISOPROPYL ALCOHOL / Membrane-associated protein slr1513![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Bu, G. / Simmons, C.R. / Nielsen, D.R. / Nannenga, B.L. | ||||||
![]() | ![]() Title: Tetragonal crystal form of the cyanobacterial bicarbonate-transporter regulator SbtB from Synechocystis sp. PCC 6803. Authors: Bu, G. / Simmons, C.R. / Nielsen, D.R. / Nannenga, B.L. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 91.7 KB | Display | ![]() |
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PDB format | ![]() | 64.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.3 MB | Display | ![]() |
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Full document | ![]() | 1.3 MB | Display | |
Data in XML | ![]() | 10.8 KB | Display | |
Data in CIF | ![]() | 15 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 3dfeS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 12021.810 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Chemical | ChemComp-NA / | #4: Water | ChemComp-HOH / | Has ligand of interest | Y | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 50.14 % |
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Crystal grow | Temperature: 294 K / Method: vapor diffusion, sitting drop Details: 0.2 M trisodium citrate, 0.1 M HEPES pH 7.2, 12% (v/v) isopropanol, 0.2 M nickel chloride |
-Data collection
Diffraction | Mean temperature: 80 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS EIGER X 9M / Detector: PIXEL / Date: Feb 21, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.92009 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→50 Å / Num. obs: 20957 / % possible obs: 89.5 % / Redundancy: 7.9 % / Biso Wilson estimate: 20.12 Å2 / CC1/2: 0.987 / Rmerge(I) obs: 0.093 / Net I/σ(I): 29.1 |
Reflection shell | Resolution: 1.8→1.83 Å / Rmerge(I) obs: 0.448 / Mean I/σ(I) obs: 4.3 / Num. unique obs: 1851 / CC1/2: 0.92 / % possible all: 96.2 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 3dfe Resolution: 1.8→33.75 Å / SU ML: 0.1964 / Cross valid method: FREE R-VALUE / σ(F): 1.36 / Phase error: 19.3848 / Stereochemistry target values: GeoStd + Monomer Library
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 25.16 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→33.75 Å
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Refine LS restraints |
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LS refinement shell |
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