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Open data
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Basic information
| Entry | Database: PDB / ID: 6wer | ||||||
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| Title | DENV2 NS1 in complex with neutralizing 2B7 Fab fragment | ||||||
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Keywords | VIRAL PROTEIN / Flavivirus NS1 / Antibody / Fab fragment | ||||||
| Function / homology | Function and homology informationflavivirin / symbiont-mediated suppression of host JAK-STAT cascade via inhibition of host TYK2 activity / host cell mitochondrion / symbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT2 activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity / ribonucleoside triphosphate phosphatase activity / viral capsid / double-stranded RNA binding / nucleoside-triphosphate phosphatase / channel activity ...flavivirin / symbiont-mediated suppression of host JAK-STAT cascade via inhibition of host TYK2 activity / host cell mitochondrion / symbiont-mediated suppression of host JAK-STAT cascade via inhibition of STAT2 activity / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity / ribonucleoside triphosphate phosphatase activity / viral capsid / double-stranded RNA binding / nucleoside-triphosphate phosphatase / channel activity / monoatomic ion transmembrane transport / clathrin-dependent endocytosis of virus by host cell / mRNA (guanine-N7)-methyltransferase / methyltransferase cap1 / methyltransferase cap1 activity / mRNA 5'-cap (guanine-N7-)-methyltransferase activity / RNA helicase activity / protein dimerization activity / host cell perinuclear region of cytoplasm / host cell endoplasmic reticulum membrane / RNA helicase / symbiont-mediated suppression of host type I interferon-mediated signaling pathway / symbiont-mediated activation of host autophagy / RNA-directed RNA polymerase / serine-type endopeptidase activity / viral RNA genome replication / RNA-directed RNA polymerase activity / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell nucleus / virion membrane / structural molecule activity / ATP hydrolysis activity / proteolysis / extracellular region / ATP binding / metal ion binding / membrane Similarity search - Function | ||||||
| Biological species | Dengue virus 2![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.96 Å | ||||||
Authors | Akey, D.L. / Smith, J.L. | ||||||
| Funding support | United States, 1items
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Citation | Journal: Science / Year: 2021Title: Structural basis for antibody inhibition of flavivirus NS1-triggered endothelial dysfunction. Authors: Biering, S.B. / Akey, D.L. / Wong, M.P. / Brown, W.C. / Lo, N.T.N. / Puerta-Guardo, H. / Tramontini Gomes de Sousa, F. / Wang, C. / Konwerski, J.R. / Espinosa, D.A. / Bockhaus, N.J. / ...Authors: Biering, S.B. / Akey, D.L. / Wong, M.P. / Brown, W.C. / Lo, N.T.N. / Puerta-Guardo, H. / Tramontini Gomes de Sousa, F. / Wang, C. / Konwerski, J.R. / Espinosa, D.A. / Bockhaus, N.J. / Glasner, D.R. / Li, J. / Blanc, S.F. / Juan, E.Y. / Elledge, S.J. / Mina, M.J. / Beatty, P.R. / Smith, J.L. / Harris, E. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6wer.cif.gz | 728.9 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6wer.ent.gz | 511.4 KB | Display | PDB format |
| PDBx/mmJSON format | 6wer.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6wer_validation.pdf.gz | 503.1 KB | Display | wwPDB validaton report |
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| Full document | 6wer_full_validation.pdf.gz | 521.8 KB | Display | |
| Data in XML | 6wer_validation.xml.gz | 52.2 KB | Display | |
| Data in CIF | 6wer_validation.cif.gz | 70.3 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/we/6wer ftp://data.pdbj.org/pub/pdb/validation_reports/we/6wer | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6weqC ![]() 7k93C ![]() 4o6bS S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Components
About Yorodumi




Dengue virus 2
X-RAY DIFFRACTION
United States, 1items
Citation










PDBj




