[English] 日本語
Yorodumi- PDB-6vwz: Crystal structure of air-exposed C45G/T50C D. vulgaris carbon mon... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6vwz | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Crystal structure of air-exposed C45G/T50C D. vulgaris carbon monoxide dehydrogenase (20 minute air exposure) | |||||||||||||||
Components | Carbon monoxide dehydrogenase | |||||||||||||||
Keywords | OXIDOREDUCTASE / nickel-iron-sulfur (Ni-Fe-S) cluster / iron-sulfur (Fe-S) cluster / metalloenzyme | |||||||||||||||
Function / homology | Function and homology information anaerobic carbon monoxide dehydrogenase / anaerobic carbon-monoxide dehydrogenase activity / : / hydroxylamine reductase activity / nickel cation binding / generation of precursor metabolites and energy / response to hydrogen peroxide / 2 iron, 2 sulfur cluster binding / peroxidase activity / 4 iron, 4 sulfur cluster binding Similarity search - Function | |||||||||||||||
Biological species | Desulfovibrio vulgaris (bacteria) | |||||||||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.488 Å | |||||||||||||||
Authors | Wittenborn, E.C. / Drennan, C.L. | |||||||||||||||
Funding support | United States, 4items
| |||||||||||||||
Citation | Journal: Acs Catalysis / Year: 2020 Title: The Solvent-Exposed Fe-S D-Cluster Contributes to Oxygen-Resistance inDesulfovibrio vulgarisNi-Fe Carbon Monoxide Dehydrogenase. Authors: Wittenborn, E.C. / Guendon, C. / Merrouch, M. / Benvenuti, M. / Fourmond, V. / Leger, C. / Drennan, C.L. / Dementin, S. | |||||||||||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 6vwz.cif.gz | 247 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb6vwz.ent.gz | 194.4 KB | Display | PDB format |
PDBx/mmJSON format | 6vwz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6vwz_validation.pdf.gz | 358.5 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 6vwz_full_validation.pdf.gz | 358.5 KB | Display | |
Data in XML | 6vwz_validation.xml.gz | 1.3 KB | Display | |
Data in CIF | 6vwz_validation.cif.gz | 14.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vw/6vwz ftp://data.pdbj.org/pub/pdb/validation_reports/vw/6vwz | HTTPS FTP |
-Related structure data
Related structure data | 6vwyC 6vx0C 6vx1C 6b6vS S: Starting model for refinement C: citing same article (ref.) |
---|---|
Similar structure data |
-Links
-Assembly
Deposited unit |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Unit cell |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
|