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Yorodumi- PDB-6vue: wild-type choline TMA lyase in complex with 1-methyl-1,2,3,6-tetr... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6vue | ||||||||||||
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Title | wild-type choline TMA lyase in complex with 1-methyl-1,2,3,6-tetrahydropyridin-3-ol | ||||||||||||
Components | Choline trimethylamine-lyase | ||||||||||||
Keywords | LYASE/INHIBITOR / Choline-TMA Lyase / Microbiome choline CutC inhibitor / LYASE / LYASE-INHIBITOR complex | ||||||||||||
Function / homology | Function and homology information choline trimethylamine-lyase / carbon-nitrogen lyase activity / choline catabolic process / choline binding / protein homodimerization activity / cytosol Similarity search - Function | ||||||||||||
Biological species | Desulfovibrio alaskensis (bacteria) | ||||||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.28 Å | ||||||||||||
Authors | Ortega, M.A. / Drennan, C.L. | ||||||||||||
Funding support | United States, 3items
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Citation | Journal: Acs Med.Chem.Lett. / Year: 2020 Title: Discovery of a Cyclic Choline Analog That Inhibits Anaerobic Choline Metabolism by Human Gut Bacteria. Authors: Bollenbach, M. / Ortega, M. / Orman, M. / Drennan, C.L. / Balskus, E.P. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6vue.cif.gz | 335.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6vue.ent.gz | 268.1 KB | Display | PDB format |
PDBx/mmJSON format | 6vue.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6vue_validation.pdf.gz | 352.5 KB | Display | wwPDB validaton report |
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Full document | 6vue_full_validation.pdf.gz | 353 KB | Display | |
Data in XML | 6vue_validation.xml.gz | 1.4 KB | Display | |
Data in CIF | 6vue_validation.cif.gz | 18.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vu/6vue ftp://data.pdbj.org/pub/pdb/validation_reports/vu/6vue | HTTPS FTP |
-Related structure data
Related structure data | 5fauS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Components on special symmetry positions |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: 1
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