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Open data
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Basic information
Entry | Database: PDB / ID: 6s2s | ||||||
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Title | Hydrogenated human myelin protein P2 at 0.86-A resolution | ||||||
![]() | Myelin P2 protein | ||||||
![]() | LIPID BINDING PROTEIN / FABP / beta barrel / fatty acid | ||||||
Function / homology | ![]() membrane organization / cholesterol binding / fatty acid transport / fatty acid binding / myelin sheath / extracellular exosome / nucleus / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Laulumaa, S. / Kursula, P. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Sub-Atomic Resolution Crystal Structures Reveal Conserved Geometric Outliers at Functional Sites. Authors: Laulumaa, S. / Kursula, P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 132.8 KB | Display | ![]() |
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PDB format | ![]() | 106.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 832.6 KB | Display | ![]() |
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Full document | ![]() | 836.4 KB | Display | |
Data in XML | ![]() | 13 KB | Display | |
Data in CIF | ![]() | 19.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6s2mC ![]() 4bvmS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14991.470 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||||||||
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#2: Chemical | #3: Chemical | ChemComp-PLM / | #4: Chemical | ChemComp-VCA / | #5: Water | ChemComp-HOH / | Has ligand of interest | N | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.84 Å3/Da / Density % sol: 56.62 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, sitting drop / pH: 5 / Details: 24% PEG6000, 0.1 M sodium citrate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: May 3, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.8266 Å / Relative weight: 1 |
Reflection | Resolution: 0.86→50 Å / Num. obs: 137969 / % possible obs: 94.4 % / Redundancy: 7.2 % / Biso Wilson estimate: 11.3 Å2 / CC1/2: 0.997 / Rrim(I) all: 0.068 / Rsym value: 0.063 / Net I/σ(I): 14.7 |
Reflection shell | Resolution: 0.86→0.88 Å / Redundancy: 7 % / Mean I/σ(I) obs: 1.2 / Num. unique obs: 9267 / CC1/2: 0.441 / Rrim(I) all: 1.758 / Rsym value: 1.631 / % possible all: 87 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4bvm Resolution: 0.86→28.965 Å / SU ML: 0.06 / Cross valid method: FREE R-VALUE / σ(F): 1.99 / Phase error: 10.07
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 0.86→28.965 Å
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Refine LS restraints |
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LS refinement shell |
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