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- PDB-6rra: X-RAY STRUCTURE OF THE FERREDOXIN-NADP REDUCTASE FROM BRUCELLA OV... -
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Open data
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Basic information
Entry | Database: PDB / ID: 6rra | ||||||
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Title | X-RAY STRUCTURE OF THE FERREDOXIN-NADP REDUCTASE FROM BRUCELLA OVIS IN COMPLEX WITH NADP | ||||||
![]() | Ferredoxin--NADP reductase | ||||||
![]() | OXIDOREDUCTASE | ||||||
Function / homology | ![]() ferredoxin-NADP+ reductase / ferredoxin-NADP+ reductase activity / nucleotide binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Martinez-Julvez, M. / Taleb, V. / Medina, M. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Towards the competent conformation for catalysis in the ferredoxin-NADP+reductase from the Brucella ovis pathogen. Authors: Perez-Amigot, D. / Taleb, V. / Boneta, S. / Anoz-Carbonell, E. / Sebastian, M. / Velazquez-Campoy, A. / Polo, V. / Martinez-Julvez, M. / Medina, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 76.8 KB | Display | ![]() |
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PDB format | ![]() | 54.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1.2 MB | Display | ![]() |
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Full document | ![]() | 1.2 MB | Display | |
Data in XML | ![]() | 15.6 KB | Display | |
Data in CIF | ![]() | 22.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6rr3C ![]() 2qdxS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 29369.414 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Strain: ATCC 25840 / 63/290 / NCTC 10512 / Gene: fpr, BOV_0348 / Variant: ATCC 25840 / 63/290 / NCTC 10512 / Production host: ![]() ![]() |
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#2: Chemical | ChemComp-FAD / |
#3: Chemical | ChemComp-NAP / |
#4: Chemical | ChemComp-SO4 / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.97 Å3/Da / Density % sol: 58.65 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: Soaking of crystals generated in 2% PEG 400, 0.1 M HEPES pH 7.5 and 2 M ammonium sulphate, with a 10 mM of NADP+ solution for 25 min. |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Apr 20, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97926 Å / Relative weight: 1 |
Reflection | Resolution: 1.4→84.24 Å / Num. obs: 69102 / % possible obs: 99.3 % / Redundancy: 4.5 % / CC1/2: 0.997 / Rmerge(I) obs: 0.056 / Net I/σ(I): 12.7 |
Reflection shell | Resolution: 1.4→1.48 Å / Redundancy: 3.6 % / Rmerge(I) obs: 0.515 / Mean I/σ(I) obs: 2.1 / Num. unique obs: 9824 / CC1/2: 0.811 / % possible all: 97.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 2QDX Resolution: 1.4→54.18 Å / Cross valid method: FREE R-VALUE
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Refinement step | Cycle: LAST / Resolution: 1.4→54.18 Å
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