+Open data
-Basic information
Entry | Database: PDB / ID: 6r8e | |||||||||||||||||||||||||||||||||||||||||||
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Title | SC14 G-hairpin | |||||||||||||||||||||||||||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / G-hairpin DNA NMR spectroscopy structure dynamics | Function / homology | DNA / DNA (> 10) | Function and homology information Biological species | Saccharomyces cerevisiae (brewer's yeast) | Method | SOLUTION NMR / simulated annealing | Authors | Lenarcic Zivkovic, M. / Trantirek, L. / Plavec, J. | Funding support | Slovenia, Czech Republic, 6items |
Citation | Journal: Nucleic Acids Res. / Year: 2021 | Title: Insight into formation propensity of pseudocircular DNA G-hairpins. Authors: Zivkovic, M.L. / Gajarsky, M. / Bekova, K. / Stadlbauer, P. / Vicherek, L. / Petrova, M. / Fiala, R. / Rosenberg, I. / Sponer, J. / Plavec, J. / Trantirek, L. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6r8e.cif.gz | 93.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6r8e.ent.gz | 75.1 KB | Display | PDB format |
PDBx/mmJSON format | 6r8e.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6r8e_validation.pdf.gz | 202.3 KB | Display | wwPDB validaton report |
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Full document | 6r8e_full_validation.pdf.gz | 240.9 KB | Display | |
Data in XML | 6r8e_validation.xml.gz | 4.8 KB | Display | |
Data in CIF | 6r8e_validation.cif.gz | 7.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/r8/6r8e ftp://data.pdbj.org/pub/pdb/validation_reports/r8/6r8e | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 4413.846 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) Saccharomyces cerevisiae (brewer's yeast) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 2 | |||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |