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- PDB-1ut3: Solution Structure of Spheniscin-2, a beta-Defensin from Penguin ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1ut3 | ||||||
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Title | Solution Structure of Spheniscin-2, a beta-Defensin from Penguin Stomach Preserving Food | ||||||
![]() | SPHENISCIN-2 | ||||||
![]() | ANTIBIOTIC / ANTIMICROBIAL PEPTIDE / PENGUIN / DEFENSIN / GASTROINTESTINAL IMMUNITY / FUNGICIDE | ||||||
Function / homology | Beta defensin type / Beta defensin / defense response to fungus / killing of cells of another organism / defense response to bacterium / extracellular region / Spheniscin-2![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR | ||||||
![]() | Landon, C. / Labbe, H. / Thouzeau, C. / Bulet, P. / Vovelle, F. | ||||||
![]() | ![]() Title: Solution Structure of Spheniscin, a {Beta}-Defensin from the Penguin Stomach Authors: Landon, C. / Thouzeau, C. / Labbe, H. / Bulet, P. / Vovelle, F. #1: Journal: J.Biol.Chem. / Year: 2003 Title: Spheniscins, Avian Beta-Defensins in Preserved Stomach Contents of the King Penguin, Aptenodytes Patagonicus. Authors: Thouzeau, C. / Le Maho, Y. / Froget, G. / Sabatier, L. / Le Bohec, C. / Hoffmann, J.A. / Bulet, P. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: AUTHOR PROVIDED. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 124.6 KB | Display | ![]() |
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PDB format | ![]() | 103.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 337.2 KB | Display | ![]() |
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Full document | ![]() | 384.3 KB | Display | |
Data in XML | ![]() | 8 KB | Display | |
Data in CIF | ![]() | 12 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 4517.485 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: THE STUDIES ON THE KING PENGUINS WERE CARRIED OUT ON POSSESSION ISLAND, CROZET ARCHIPELAGO. Source: (synth.) ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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Sample preparation
Sample conditions | pH: 4.3 / Pressure: 1 atm / Temperature: 293 K |
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-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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Processing
NMR software |
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NMR ensemble | Conformer selection criteria: LOWEST ENERGY, LEAST RESTRAINT VIOLATION Conformers calculated total number: 100 / Conformers submitted total number: 10 |