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Open data
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Basic information
Entry | Database: PDB / ID: 6r8e | |||||||||||||||||||||||||||||||||||||||||||
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Title | SC14 G-hairpin | |||||||||||||||||||||||||||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / G-hairpin DNA NMR spectroscopy structure dynamics | Function / homology | DNA / DNA (> 10) | ![]() Biological species | ![]() ![]() Method | SOLUTION NMR / simulated annealing | ![]() Lenarcic Zivkovic, M. / Trantirek, L. / Plavec, J. | Funding support | | ![]() ![]()
![]() ![]() Title: Insight into formation propensity of pseudocircular DNA G-hairpins. Authors: Zivkovic, M.L. / Gajarsky, M. / Bekova, K. / Stadlbauer, P. / Vicherek, L. / Petrova, M. / Fiala, R. / Rosenberg, I. / Sponer, J. / Plavec, J. / Trantirek, L. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 93.1 KB | Display | ![]() |
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PDB format | ![]() | 75.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 202.3 KB | Display | ![]() |
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Full document | ![]() | 240.9 KB | Display | |
Data in XML | ![]() | 4.8 KB | Display | |
Data in CIF | ![]() | 7.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
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NMR ensembles |
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Components
#1: DNA chain | Mass: 4413.846 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
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Refinement | Method: simulated annealing / Software ordinal: 2 | |||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |