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Open data
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Basic information
Entry | Database: PDB / ID: 6r3t | |||||||||
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Title | Structure of P110 from Mycoplasma Genitalium at 2.7A | |||||||||
![]() | Mgp-operon protein 3 | |||||||||
![]() | SUGAR BINDING PROTEIN / Adhesin | |||||||||
Function / homology | MgpC adhesin / Mgp-operon protein 3, C-terminal domain / MgpC adhesin / MGP3 C-terminal domain / cell adhesion / plasma membrane / : / PHOSPHATE ION / Mgp-operon protein 3![]() | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Aparicio, D. / Fita, I. | |||||||||
![]() | ![]() Title: Mycoplasma genitalium adhesin P110 binds sialic-acid human receptors. Authors: Aparicio, D. / Torres-Puig, S. / Ratera, M. / Querol, E. / Pinol, J. / Pich, O.Q. / Fita, I. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 363.8 KB | Display | ![]() |
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PDB format | ![]() | 298.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 441.6 KB | Display | ![]() |
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Full document | ![]() | 460 KB | Display | |
Data in XML | ![]() | 32.7 KB | Display | |
Data in CIF | ![]() | 45.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 99555.203 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() | ||
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#2: Chemical | ChemComp-PO4 / | ||
#3: Chemical | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.6 Å3/Da / Density % sol: 65.88 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: 11% PEG 8000 0.1M Imidazole pH 8 0.2M Calcium acetate |
-Data collection
Diffraction | Mean temperature: 293 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Mar 10, 2016 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.12712 Å / Relative weight: 1 |
Reflection | Resolution: 2.7→62 Å / Num. obs: 39641 / % possible obs: 98.9 % / Redundancy: 4.6 % / Rmerge(I) obs: 0.047 / Rpim(I) all: 0.052 / Net I/σ(I): 19.1 |
Reflection shell | Resolution: 2.7→2.77 Å / Redundancy: 4.8 % / Num. unique obs: 39641 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 89.398 Å2
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Refinement step | Cycle: 1 / Resolution: 2.73→54.86 Å
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Refine LS restraints |
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