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Yorodumi- PDB-6pdl: Crystal Structure of Hendra Virus Attachment G Glycoprotein in Co... -
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Basic information
| Entry | Database: PDB / ID: 6pdl | ||||||||||||
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| Title | Crystal Structure of Hendra Virus Attachment G Glycoprotein in Complex with Receptor Ephrin-B2 | ||||||||||||
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Keywords | VIRAL PROTEIN/SIGNALING PROTEIN / attachment / glycoprotein / G protein / VIRAL PROTEIN / receptor / VIRAL PROTEIN-SIGNALING PROTEIN complex | ||||||||||||
| Function / homology | Function and homology informationvenous blood vessel morphogenesis / nephric duct morphogenesis / positive regulation of aorta morphogenesis / positive regulation of cardiac muscle cell differentiation / presynapse assembly / lymph vessel development / regulation of chemotaxis / adherens junction organization / cell migration involved in sprouting angiogenesis / EPH-Ephrin signaling ...venous blood vessel morphogenesis / nephric duct morphogenesis / positive regulation of aorta morphogenesis / positive regulation of cardiac muscle cell differentiation / presynapse assembly / lymph vessel development / regulation of chemotaxis / adherens junction organization / cell migration involved in sprouting angiogenesis / EPH-Ephrin signaling / blood vessel morphogenesis / Ephrin signaling / regulation of postsynaptic neurotransmitter receptor internalization / exo-alpha-sialidase activity / keratinocyte proliferation / EPH-ephrin mediated repulsion of cells / anatomical structure morphogenesis / negative regulation of keratinocyte proliferation / ephrin receptor signaling pathway / regulation of postsynaptic membrane neurotransmitter receptor levels / ephrin receptor binding / T cell costimulation / EPHB-mediated forward signaling / axon guidance / animal organ morphogenesis / adherens junction / postsynaptic density membrane / Schaffer collateral - CA1 synapse / cell-cell signaling / negative regulation of neuron projection development / cellular response to lipopolysaccharide / presynaptic membrane / virus receptor activity / host cell surface / cell adhesion / host cell surface receptor binding / focal adhesion / positive regulation of cell population proliferation / dendrite / viral envelope / symbiont entry into host cell / virion attachment to host cell / host cell plasma membrane / glutamatergic synapse / virion membrane / membrane / plasma membrane Similarity search - Function | ||||||||||||
| Biological species | Hendra henipavirus Homo sapiens (human) | ||||||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.7 Å | ||||||||||||
Authors | Xu, K. / Nikolov, D.B. | ||||||||||||
| Funding support | United States, 3items
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Citation | Journal: PLoS ONE / Year: 2012Title: New insights into the Hendra virus attachment and entry process from structures of the virus G glycoprotein and its complex with Ephrin-B2. Authors: Xu, K. / Chan, Y.P. / Rajashankar, K.R. / Khetawat, D. / Yan, L. / Kolev, M.V. / Broder, C.C. / Nikolov, D.B. #1: Journal: Glycobiology / Year: 2012 Title: Site occupancy and glycan compositional analysis of two soluble recombinant forms of the attachment glycoprotein of Hendra virus. Authors: Colgrave, M.L. / Snelling, H.J. / Shiell, B.J. / Feng, Y.R. / Chan, Y.P. / Bossart, K.N. / Xu, K. / Nikolov, D.B. / Broder, C.C. / Michalski, W.P. | ||||||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 6pdl.cif.gz | 470.3 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb6pdl.ent.gz | 385.5 KB | Display | PDB format |
| PDBx/mmJSON format | 6pdl.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 6pdl_validation.pdf.gz | 4 MB | Display | wwPDB validaton report |
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| Full document | 6pdl_full_validation.pdf.gz | 4 MB | Display | |
| Data in XML | 6pdl_validation.xml.gz | 88.6 KB | Display | |
| Data in CIF | 6pdl_validation.cif.gz | 120.7 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pd/6pdl ftp://data.pdbj.org/pub/pdb/validation_reports/pd/6pdl | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 6pd4C ![]() 3d11S S: Starting model for refinement C: citing same article ( |
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| Similar structure data |
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Assembly
| Deposited unit | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Hendra henipavirus
Homo sapiens (human)
X-RAY DIFFRACTION
United States, 3items
Citation











PDBj












