Method to determine structure: SAD / Resolution: 2.501→45.97 Å / Cor.coef. Fo:Fc: 0.934 / Cor.coef. Fo:Fc free: 0.922 / SU B: 12.141 / SU ML: 0.126 / Cross valid method: THROUGHOUT / ESU R: 0.228 / ESU R Free: 0.19 / Stereochemistry target values: MAXIMUM LIKELIHOOD Details: U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.22456
2004
8.6 %
RANDOM
Rwork
0.20232
-
-
-
obs
0.20422
23351
99.97 %
-
Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.1 Å / Solvent model: MASK
Displacement parameters
Biso mean: 39.58 Å2
Baniso -1
Baniso -2
Baniso -3
1-
0 Å2
0 Å2
0 Å2
2-
-
0 Å2
0 Å2
3-
-
-
0 Å2
Refinement step
Cycle: LAST / Resolution: 2.501→45.97 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
2228
0
55
27
2310
Refine LS restraints
Refine-ID
Type
Dev ideal
Dev ideal target
Number
X-RAY DIFFRACTION
r_bond_refined_d
0.013
0.018
2325
X-RAY DIFFRACTION
r_bond_other_d
0.002
0.02
2105
X-RAY DIFFRACTION
r_angle_refined_deg
1.501
1.851
3130
X-RAY DIFFRACTION
r_angle_other_deg
1.06
2.849
4841
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
6.265
5
271
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
37.358
22.656
128
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
15.29
15
338
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
21.029
15
28
X-RAY DIFFRACTION
r_chiral_restr
0.084
0.2
334
X-RAY DIFFRACTION
r_gen_planes_refined
0.005
0.02
2575
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
517
X-RAY DIFFRACTION
r_mcbond_it
3.573
3.41
1102
X-RAY DIFFRACTION
r_mcbond_other
3.56
3.407
1101
X-RAY DIFFRACTION
r_mcangle_it
5.194
5.076
1367
X-RAY DIFFRACTION
r_mcangle_other
5.196
5.079
1368
X-RAY DIFFRACTION
r_scbond_it
5.716
4.31
1223
X-RAY DIFFRACTION
r_scbond_other
5.715
4.311
1224
X-RAY DIFFRACTION
r_scangle_other
8.317
6.143
1764
X-RAY DIFFRACTION
r_long_range_B_refined
9.883
41.857
2380
X-RAY DIFFRACTION
r_long_range_B_other
9.878
41.836
2379
LS refinement shell
Resolution: 2.501→2.566 Å / Total num. of bins used: 20
Rfactor
Num. reflection
% reflection
Rfree
0.274
147
-
Rwork
0.257
1559
-
obs
-
-
100 %
Refinement TLS params.
Method: refined / Refine-ID: X-RAY DIFFRACTION
ID
L11 (°2)
L12 (°2)
L13 (°2)
L22 (°2)
L23 (°2)
L33 (°2)
S11 (Å °)
S12 (Å °)
S13 (Å °)
S21 (Å °)
S22 (Å °)
S23 (Å °)
S31 (Å °)
S32 (Å °)
S33 (Å °)
T11 (Å2)
T12 (Å2)
T13 (Å2)
T22 (Å2)
T23 (Å2)
T33 (Å2)
Origin x (Å)
Origin y (Å)
Origin z (Å)
1
2.5796
0.6828
-0.0785
3.9314
0.3618
2.422
-0.0167
0.2098
0.1666
-0.2625
0.0355
0.2298
-0.2267
-0.1195
-0.0188
0.0742
0.0017
-0.0415
0.0263
0.0142
0.0577
48.329
65.7
46.815
2
2.4242
-0.9196
0.068
3.5536
-0.6259
1.7715
0.1021
0.1347
-0.2462
-0.3704
-0.0045
0.3299
0.1847
-0.3413
-0.0976
0.137
-0.0062
-0.0842
0.0882
0.0033
0.0871
43.298
98.236
42.455
Refinement TLS group
ID
Refine-ID
Refine TLS-ID
Auth asym-ID
Auth seq-ID
1
X-RAY DIFFRACTION
1
A
4 - 148
2
X-RAY DIFFRACTION
2
B
4 - 148
+
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