Protein of unknown function DUF5762 / Protein of unknown function DUF5761 / Domain of unknown function DUF5899 / Family of unknown function (DUF5761) / Family of unknown function (DUF5762) / Family of unknown function (DUF5899) / Major capsid protein, N-terminal / Major capsid protein N-terminus / Major capsid protein, C-terminal / Major capsid protein, C-terminal domain superfamily ...Protein of unknown function DUF5762 / Protein of unknown function DUF5761 / Domain of unknown function DUF5899 / Family of unknown function (DUF5761) / Family of unknown function (DUF5762) / Family of unknown function (DUF5899) / Major capsid protein, N-terminal / Major capsid protein N-terminus / Major capsid protein, C-terminal / Major capsid protein, C-terminal domain superfamily / Large eukaryotic DNA virus major capsid protein / Group II dsDNA virus coat/capsid protein 類似検索 - ドメイン・相同性
Uncharacterized protein / Capsid protein / Major capsid protein / Uncharacterized protein / PsbP C-terminal domain-containing protein / Uncharacterized protein / Uncharacterized protein / DUF5899 domain-containing protein / Uncharacterized protein / SAYSvFN domain-containing protein ...Uncharacterized protein / Capsid protein / Major capsid protein / Uncharacterized protein / PsbP C-terminal domain-containing protein / Uncharacterized protein / Uncharacterized protein / DUF5899 domain-containing protein / Uncharacterized protein / SAYSvFN domain-containing protein / Uncharacterized protein / Uncharacterized protein / Uncharacterized protein / Capsid protein / Uncharacterized protein 類似検索 - 構成要素
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
AI011219
米国
引用
ジャーナル: Nat Commun / 年: 2019 タイトル: Near-atomic structure of a giant virus. 著者: Qianglin Fang / Dongjie Zhu / Irina Agarkova / Jagat Adhikari / Thomas Klose / Yue Liu / Zhenguo Chen / Yingyuan Sun / Michael L Gross / James L Van Etten / Xinzheng Zhang / Michael G Rossmann / 要旨: Although the nucleocytoplasmic large DNA viruses (NCLDVs) are one of the largest group of viruses that infect many eukaryotic hosts, the near-atomic resolution structures of these viruses have ...Although the nucleocytoplasmic large DNA viruses (NCLDVs) are one of the largest group of viruses that infect many eukaryotic hosts, the near-atomic resolution structures of these viruses have remained unknown. Here we describe a 3.5 Å resolution icosahedrally averaged capsid structure of Paramecium bursaria chlorella virus 1 (PBCV-1). This structure consists of 5040 copies of the major capsid protein, 60 copies of the penton protein and 1800 minor capsid proteins of which there are 13 different types. The minor capsid proteins form a hexagonal network below the outer capsid shell, stabilizing the capsid by binding neighboring capsomers together. The size of the viral capsid is determined by a tape-measure, minor capsid protein of which there are 60 copies in the virion. Homologs of the tape-measure protein and some of the other minor capsid proteins exist in other NCLDVs. Thus, a similar capsid assembly pathway might be used by other NCLDVs.
#241 - 2020年1月 20年の分子を振り返って (Twenty Years of Molecules) 類似性 (1)
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集合体
登録構造単位
a0: P14 a1: P9 a2: P10 a3: P10 a4: P7 a5: P6 a6: P1 a7: P12 a8: P5 a9: P11 b0: P11 b1: P11 b2: P11 b3: P11 b4: P11 b5: P11 b6: P2 b7: P11 b8: P11 c0: P11 c1: P11 c2: P4 c3: P4 c4: P4 c5: P4 c6: P3 c7: P3 c8: P3 c9: P8 d0: Major capsid protein d1: Major capsid protein d2: Major capsid protein d3: Major capsid protein d4: Major capsid protein d5: Major capsid protein d6: Major capsid protein d7: Major capsid protein d8: Major capsid protein d9: Major capsid protein e0: Major capsid protein e1: Major capsid protein e2: Major capsid protein e3: Major capsid protein e4: Major capsid protein e5: Major capsid protein e6: Major capsid protein e7: Major capsid protein e8: Major capsid protein e9: Major capsid protein f0: Major capsid protein f1: Major capsid protein f2: Major capsid protein f3: Major capsid protein f4: Major capsid protein f5: Major capsid protein f6: Major capsid protein f7: Major capsid protein f8: Major capsid protein f9: Major capsid protein g0: Major capsid protein g1: Major capsid protein g2: Major capsid protein g3: Major capsid protein g4: Major capsid protein g5: Major capsid protein g6: Major capsid protein g7: Major capsid protein g8: Major capsid protein g9: Major capsid protein h0: Major capsid protein h1: Major capsid protein h2: Major capsid protein h3: Major capsid protein h4: Major capsid protein h5: Major capsid protein h6: Major capsid protein h7: Major capsid protein h8: Major capsid protein h9: Major capsid protein i0: Major capsid protein i1: Major capsid protein i2: Major capsid protein i3: Major capsid protein i4: Major capsid protein i5: Major capsid protein i6: Major capsid protein i7: Major capsid protein i8: Major capsid protein i9: Major capsid protein j0: Major capsid protein j1: Major capsid protein j2: Major capsid protein j3: Major capsid protein j4: Major capsid protein j5: Major capsid protein j6: Major capsid protein j7: Major capsid protein j8: Major capsid protein j9: Major capsid protein k0: Major capsid protein k1: Major capsid protein k2: Major capsid protein k3: Major capsid protein k4: Major capsid protein k5: Major capsid protein k6: Major capsid protein k7: Major capsid protein k8: Major capsid protein k9: Major capsid protein l0: Major capsid protein l1: Major capsid protein l2: Major capsid protein l3: Major capsid protein l4: P13 l5: P11
a0: P14 a1: P9 a2: P10 a3: P10 a4: P7 a5: P6 a6: P1 a7: P12 a8: P5 a9: P11 b0: P11 b1: P11 b2: P11 b3: P11 b4: P11 b5: P11 b6: P2 b7: P11 b8: P11 c0: P11 c1: P11 c2: P4 c3: P4 c4: P4 c5: P4 c6: P3 c7: P3 c8: P3 c9: P8 d0: Major capsid protein d1: Major capsid protein d2: Major capsid protein d3: Major capsid protein d4: Major capsid protein d5: Major capsid protein d6: Major capsid protein d7: Major capsid protein d8: Major capsid protein d9: Major capsid protein e0: Major capsid protein e1: Major capsid protein e2: Major capsid protein e3: Major capsid protein e4: Major capsid protein e5: Major capsid protein e6: Major capsid protein e7: Major capsid protein e8: Major capsid protein e9: Major capsid protein f0: Major capsid protein f1: Major capsid protein f2: Major capsid protein f3: Major capsid protein f4: Major capsid protein f5: Major capsid protein f6: Major capsid protein f7: Major capsid protein f8: Major capsid protein f9: Major capsid protein g0: Major capsid protein g1: Major capsid protein g2: Major capsid protein g3: Major capsid protein g4: Major capsid protein g5: Major capsid protein g6: Major capsid protein g7: Major capsid protein g8: Major capsid protein g9: Major capsid protein h0: Major capsid protein h1: Major capsid protein h2: Major capsid protein h3: Major capsid protein h4: Major capsid protein h5: Major capsid protein h6: Major capsid protein h7: Major capsid protein h8: Major capsid protein h9: Major capsid protein i0: Major capsid protein i1: Major capsid protein i2: Major capsid protein i3: Major capsid protein i4: Major capsid protein i5: Major capsid protein i6: Major capsid protein i7: Major capsid protein i8: Major capsid protein i9: Major capsid protein j0: Major capsid protein j1: Major capsid protein j2: Major capsid protein j3: Major capsid protein j4: Major capsid protein j5: Major capsid protein j6: Major capsid protein j7: Major capsid protein j8: Major capsid protein j9: Major capsid protein k0: Major capsid protein k1: Major capsid protein k2: Major capsid protein k3: Major capsid protein k4: Major capsid protein k5: Major capsid protein k6: Major capsid protein k7: Major capsid protein k8: Major capsid protein k9: Major capsid protein l0: Major capsid protein l1: Major capsid protein l2: Major capsid protein l3: Major capsid protein l4: P13 l5: P11
x 60
complete icosahedral assembly
根拠: microscopy
288 MDa, 6900 ポリマー
分子量 (理論値)
分子数
合計 (水以外)
287,584,715
6900
ポリマ-
287,584,715
6900
非ポリマー
0
0
水
0
タイプ
名称
対称操作
数
point symmetry operation
60
2
登録構造と同一(異なる座標系)
icosahedral asymmetric unit
タイプ
名称
対称操作
数
point symmetry operation
1
3
a0: P14 a1: P9 a2: P10 a3: P10 a4: P7 a5: P6 a6: P1 a7: P12 a8: P5 a9: P11 b0: P11 b1: P11 b2: P11 b3: P11 b4: P11 b5: P11 b6: P2 b7: P11 b8: P11 c0: P11 c1: P11 c2: P4 c3: P4 c4: P4 c5: P4 c6: P3 c7: P3 c8: P3 c9: P8 d0: Major capsid protein d1: Major capsid protein d2: Major capsid protein d3: Major capsid protein d4: Major capsid protein d5: Major capsid protein d6: Major capsid protein d7: Major capsid protein d8: Major capsid protein d9: Major capsid protein e0: Major capsid protein e1: Major capsid protein e2: Major capsid protein e3: Major capsid protein e4: Major capsid protein e5: Major capsid protein e6: Major capsid protein e7: Major capsid protein e8: Major capsid protein e9: Major capsid protein f0: Major capsid protein f1: Major capsid protein f2: Major capsid protein f3: Major capsid protein f4: Major capsid protein f5: Major capsid protein f6: Major capsid protein f7: Major capsid protein f8: Major capsid protein f9: Major capsid protein g0: Major capsid protein g1: Major capsid protein g2: Major capsid protein g3: Major capsid protein g4: Major capsid protein g5: Major capsid protein g6: Major capsid protein g7: Major capsid protein g8: Major capsid protein g9: Major capsid protein h0: Major capsid protein h1: Major capsid protein h2: Major capsid protein h3: Major capsid protein h4: Major capsid protein h5: Major capsid protein h6: Major capsid protein h7: Major capsid protein h8: Major capsid protein h9: Major capsid protein i0: Major capsid protein i1: Major capsid protein i2: Major capsid protein i3: Major capsid protein i4: Major capsid protein i5: Major capsid protein i6: Major capsid protein i7: Major capsid protein i8: Major capsid protein i9: Major capsid protein j0: Major capsid protein j1: Major capsid protein j2: Major capsid protein j3: Major capsid protein j4: Major capsid protein j5: Major capsid protein j6: Major capsid protein j7: Major capsid protein j8: Major capsid protein j9: Major capsid protein k0: Major capsid protein k1: Major capsid protein k2: Major capsid protein k3: Major capsid protein k4: Major capsid protein k5: Major capsid protein k6: Major capsid protein k7: Major capsid protein k8: Major capsid protein k9: Major capsid protein l0: Major capsid protein l1: Major capsid protein l2: Major capsid protein l3: Major capsid protein l4: P13 l5: P11
x 5
icosahedral pentamer
24 MDa, 575 ポリマー
分子量 (理論値)
分子数
合計 (水以外)
23,965,393
575
ポリマ-
23,965,393
575
非ポリマー
0
0
水
0
タイプ
名称
対称操作
数
point symmetry operation
5
4
a0: P14 a1: P9 a2: P10 a3: P10 a4: P7 a5: P6 a6: P1 a7: P12 a8: P5 a9: P11 b0: P11 b1: P11 b2: P11 b3: P11 b4: P11 b5: P11 b6: P2 b7: P11 b8: P11 c0: P11 c1: P11 c2: P4 c3: P4 c4: P4 c5: P4 c6: P3 c7: P3 c8: P3 c9: P8 d0: Major capsid protein d1: Major capsid protein d2: Major capsid protein d3: Major capsid protein d4: Major capsid protein d5: Major capsid protein d6: Major capsid protein d7: Major capsid protein d8: Major capsid protein d9: Major capsid protein e0: Major capsid protein e1: Major capsid protein e2: Major capsid protein e3: Major capsid protein e4: Major capsid protein e5: Major capsid protein e6: Major capsid protein e7: Major capsid protein e8: Major capsid protein e9: Major capsid protein f0: Major capsid protein f1: Major capsid protein f2: Major capsid protein f3: Major capsid protein f4: Major capsid protein f5: Major capsid protein f6: Major capsid protein f7: Major capsid protein f8: Major capsid protein f9: Major capsid protein g0: Major capsid protein g1: Major capsid protein g2: Major capsid protein g3: Major capsid protein g4: Major capsid protein g5: Major capsid protein g6: Major capsid protein g7: Major capsid protein g8: Major capsid protein g9: Major capsid protein h0: Major capsid protein h1: Major capsid protein h2: Major capsid protein h3: Major capsid protein h4: Major capsid protein h5: Major capsid protein h6: Major capsid protein h7: Major capsid protein h8: Major capsid protein h9: Major capsid protein i0: Major capsid protein i1: Major capsid protein i2: Major capsid protein i3: Major capsid protein i4: Major capsid protein i5: Major capsid protein i6: Major capsid protein i7: Major capsid protein i8: Major capsid protein i9: Major capsid protein j0: Major capsid protein j1: Major capsid protein j2: Major capsid protein j3: Major capsid protein j4: Major capsid protein j5: Major capsid protein j6: Major capsid protein j7: Major capsid protein j8: Major capsid protein j9: Major capsid protein k0: Major capsid protein k1: Major capsid protein k2: Major capsid protein k3: Major capsid protein k4: Major capsid protein k5: Major capsid protein k6: Major capsid protein k7: Major capsid protein k8: Major capsid protein k9: Major capsid protein l0: Major capsid protein l1: Major capsid protein l2: Major capsid protein l3: Major capsid protein l4: P13 l5: P11