登録情報 | データベース: PDB / ID: 6mv7 |
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タイトル | Crystal structure of RNAse 6 |
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要素 | Ribonuclease K6 |
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キーワード | HYDROLASE / rnase / nuclease |
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機能・相同性 | 機能・相同性情報
加水分解酵素; エステル加水分解酵素; 3'-リン酸モノエステル産生エンドリボヌクレアーゼ / RNA catabolic process / Antimicrobial peptides / RNA nuclease activity / defense response / antimicrobial humoral immune response mediated by antimicrobial peptide / antibacterial humoral response / cytoplasmic vesicle / endonuclease activity / defense response to Gram-negative bacterium ...加水分解酵素; エステル加水分解酵素; 3'-リン酸モノエステル産生エンドリボヌクレアーゼ / RNA catabolic process / Antimicrobial peptides / RNA nuclease activity / defense response / antimicrobial humoral immune response mediated by antimicrobial peptide / antibacterial humoral response / cytoplasmic vesicle / endonuclease activity / defense response to Gram-negative bacterium / defense response to virus / nucleic acid binding / lysosome / defense response to Gram-positive bacterium / innate immune response / extracellular space / extracellular region類似検索 - 分子機能 P-30 Protein / Ribonuclease A-like domain / Pancreatic ribonuclease / Ribonuclease A, active site / Ribonuclease A-domain / Ribonuclease A-like domain superfamily / Pancreatic ribonuclease / Pancreatic ribonuclease family signature. / Pancreatic ribonuclease / Roll / Alpha Beta類似検索 - ドメイン・相同性 |
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生物種 | Homo sapiens (ヒト) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.59 Å |
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データ登録者 | Couture, J.-F. / Doucet, N. |
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引用 | ジャーナル: Biochemistry / 年: 2020 タイトル: Insights into Structural and Dynamical Changes Experienced by Human RNase 6 upon Ligand Binding. 著者: Narayanan, C. / Bernard, D.N. / Letourneau, M. / Gagnon, J. / Gagne, D. / Bafna, K. / Calmettes, C. / Couture, J.F. / Agarwal, P.K. / Doucet, N. |
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履歴 | 登録 | 2018年10月24日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2019年11月13日 | Provider: repository / タイプ: Initial release |
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改定 2.0 | 2020年1月15日 | Group: Advisory / Atomic model ...Advisory / Atomic model / Author supporting evidence / Data collection / Refinement description / Structure summary カテゴリ: atom_site / computing ...atom_site / computing / pdbx_entity_instance_feature / pdbx_entry_details / pdbx_nonpoly_scheme / pdbx_unobs_or_zero_occ_atoms / pdbx_validate_close_contact / pdbx_validate_torsion / refine / refine_hist / refine_ls_restr / refine_ls_shell / reflns / reflns_shell / software Item: _pdbx_nonpoly_scheme.auth_seq_num / _refine.B_iso_max ..._pdbx_nonpoly_scheme.auth_seq_num / _refine.B_iso_max / _refine.B_iso_mean / _refine.B_iso_min / _refine.pdbx_ls_cross_valid_method / _refine.pdbx_method_to_determine_struct / _refine.pdbx_starting_model / _refine_hist.cycle_id / _refine_hist.number_atoms_total / _refine_hist.pdbx_B_iso_mean_ligand / _refine_hist.pdbx_B_iso_mean_solvent / _refine_hist.pdbx_number_atoms_protein / _refine_hist.pdbx_number_residues_total / _refine_ls_restr.dev_ideal / _refine_ls_restr.number / _refine_ls_restr.type / _refine_ls_shell.R_factor_R_free_error / _refine_ls_shell.d_res_high / _refine_ls_shell.d_res_low / _reflns.B_iso_Wilson_estimate / _reflns_shell.number_unique_obs / _software.version 解説: Polymer geometry / 詳細: Few ramachandran outliers were fixed. / Provider: author / タイプ: Coordinate replacement |
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改定 2.1 | 2020年5月27日 | Group: Database references / カテゴリ: citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year |
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改定 2.2 | 2023年10月11日 | Group: Advisory / Data collection ...Advisory / Data collection / Database references / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / pdbx_unobs_or_zero_occ_atoms Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession |
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