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Yorodumi- PDB-6mds: Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglu... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6mds | |||||||||
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Title | Crystal structure of Streptococcus pyogenes endo-beta-N-acetylglucosaminidase (EndoS2) with complex biantennary glycan | |||||||||
Components | Endo-beta-N-acetylglucosaminidase | |||||||||
Keywords | HYDROLASE / glycoside hydrolase / endo-beta-N-acetylglucosaminidase S2 / endoglycosidase S2 / EndoS2 | |||||||||
Function / homology | Function and homology information mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase / mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity / evasion of host immune response / carbohydrate metabolic process / calcium ion binding Similarity search - Function | |||||||||
Biological species | Streptococcus pyogenes (bacteria) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.5 Å | |||||||||
Authors | Klontz, E.H. / Trastoy, B. / Orwenyo, J. / Wang, L.X. / Guerin, M.E. / Sundberg, E.J. | |||||||||
Citation | Journal: ACS Cent Sci / Year: 2019 Title: Molecular Basis of Broad SpectrumN-Glycan Specificity and Processing of Therapeutic IgG Monoclonal Antibodies by Endoglycosidase S2. Authors: Klontz, E.H. / Trastoy, B. / Deredge, D. / Fields, J.K. / Li, C. / Orwenyo, J. / Marina, A. / Beadenkopf, R. / Gunther, S. / Flores, J. / Wintrode, P.L. / Wang, L.X. / Guerin, M.E. / Sundberg, E.J. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6mds.cif.gz | 338 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6mds.ent.gz | 268.3 KB | Display | PDB format |
PDBx/mmJSON format | 6mds.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6mds_validation.pdf.gz | 1.2 MB | Display | wwPDB validaton report |
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Full document | 6mds_full_validation.pdf.gz | 1.2 MB | Display | |
Data in XML | 6mds_validation.xml.gz | 60.3 KB | Display | |
Data in CIF | 6mds_validation.cif.gz | 84.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/md/6mds ftp://data.pdbj.org/pub/pdb/validation_reports/md/6mds | HTTPS FTP |
-Related structure data
Related structure data | 6e58SC 6mdvC S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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