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Open data
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Basic information
Entry | Database: PDB / ID: 6l7n | ||||||
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Title | crystal structure of a FUNGAL LIPASES | ||||||
![]() | Lipase, class 3 | ||||||
![]() | HYDROLASE / LIPASE | ||||||
Function / homology | Mono-/di-acylglycerol lipase, N-terminal / Lipase 3 N-terminal region / Fungal lipase-like domain / Lipase (class 3) / lipid catabolic process / Alpha/Beta hydrolase fold / Lipase, class 3![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, Y.H. / Yuan, H. / Lan, D.M. / Liu, X.H. | ||||||
![]() | ![]() Title: crystal structure of a FUNGAL LIPASES Authors: Wang, Y.H. / Yuan, H. / Lan, D.M. / Liu, X.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 87.5 KB | Display | ![]() |
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PDB format | ![]() | 50.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 423.1 KB | Display | ![]() |
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Full document | ![]() | 428.1 KB | Display | |
Data in XML | ![]() | 15.1 KB | Display | |
Data in CIF | ![]() | 22.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1dt3S S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 30811.248 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 32.27 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: 26% PEG 1500, 0.1 M Sodium acetate pH 4.0 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: May 1, 2019 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9791 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→50 Å / Num. obs: 19035 / % possible obs: 94.3 % / Redundancy: 3.4 % / Biso Wilson estimate: 12.31 Å2 / Rmerge(I) obs: 0.039 / Rpim(I) all: 0.04 / Net I/σ(I): 23.4 |
Reflection shell | Resolution: 1.8→1.85 Å / Rmerge(I) obs: 0.1 / Mean I/σ(I) obs: 12.26 / Num. unique obs: 1069 / Rpim(I) all: 0.1 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1DT3 Resolution: 1.8→50 Å / SU ML: 0.2239 / Cross valid method: THROUGHOUT / σ(F): 1.99 / Phase error: 22.376
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 14.58 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→50 Å
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Refine LS restraints |
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LS refinement shell |
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