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Open data
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Basic information
Entry | Database: PDB / ID: 6kr0 | ||||||
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Title | Crystal structure of HL homo-diabody | ||||||
![]() | HL diabody | ||||||
![]() | IMMUNE SYSTEM / Diabody | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Tanaka, Y. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Association behavior and control of the quality of cancer therapeutic bispecific diabodies expressed in Escherichia coli Authors: Nakazawa, H. / Onodera-Sugano, T. / Sugiyama, A. / Tanaka, Y. / Hattori, T. / Niide, T. / Ogata, H. / Asano, R. / Kumagai, I. / Umetsu, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 184.2 KB | Display | ![]() |
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PDB format | ![]() | 151.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 453.5 KB | Display | ![]() |
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Full document | ![]() | 461.3 KB | Display | |
Data in XML | ![]() | 33.3 KB | Display | |
Data in CIF | ![]() | 46.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Antibody | Mass: 31132.658 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.09 Å3/Da / Density % sol: 41.29 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion Details: 0.1 M Tirs-HCl pH 9.0, 0.2 M calcium chloride, 3.25 M sodium formate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX225HE / Detector: CCD / Date: Apr 9, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→45.75 Å / Num. obs: 47159 / % possible obs: 100 % / Redundancy: 7.43 % / Rsym value: 0.058 / Net I/σ(I): 27.85 |
Reflection shell | Resolution: 2.3→2.3 Å / Num. unique obs: 3394 / Rsym value: 0.887 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 2.3→45.75 Å
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