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Open data
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Basic information
Entry | Database: PDB / ID: 6iwv | ||||||
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Title | Crystal structure of a single strand DNA binding protein | ||||||
![]() | Single-stranded DNA-binding protein 2 | ||||||
![]() | DNA BINDING PROTEIN / a single strand DNA binding protein | ||||||
Function / homology | ![]() single-stranded DNA binding / regulation of DNA-templated transcription / positive regulation of transcription by RNA polymerase II / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, H.Y. / Yan, X.X. | ||||||
![]() | ![]() Title: Crystal structure of the LUFS domain of human single-stranded DNA binding Protein 2 (SSBP2). Authors: Wang, H. / Wang, Z. / Tang, Q. / Yan, X.X. / Xu, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 72.7 KB | Display | ![]() |
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PDB format | ![]() | 55.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 424.4 KB | Display | ![]() |
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Full document | ![]() | 425.8 KB | Display | |
Data in XML | ![]() | 8.4 KB | Display | |
Data in CIF | ![]() | 11.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 7854.858 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.64 Å3/Da / Density % sol: 53.41 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.3 / Details: 0.1 M Bis-Tris pH 6.3, 1.9 M Ammonium sulfate |
-Data collection
Diffraction | Mean temperature: 77 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315r / Detector: CCD / Date: Dec 1, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.52→20 Å / Num. obs: 26784 / % possible obs: 99.09 % / Redundancy: 22.8 % / CC1/2: 1 / Rpim(I) all: 0.015 / Net I/σ(I): 94.73 |
Reflection shell | Resolution: 1.52→1.55 Å / Num. unique obs: 1288 / CC1/2: 0.626 / Rpim(I) all: 0.728 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 37.964 Å2
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Refinement step | Cycle: 1 / Resolution: 1.52→20 Å
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Refine LS restraints |
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