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Yorodumi- PDB-6h5l: Kuenenia stuttgartiensis reducing HAO-like protein complex Kustc0... -
+Open data
-Basic information
Entry | Database: PDB / ID: 6h5l | ||||||
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Title | Kuenenia stuttgartiensis reducing HAO-like protein complex Kustc0457/Kustc0458 | ||||||
Components |
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Keywords | OXIDOREDUCTASE / reductase / anammox | ||||||
Function / homology | Function and homology information hydroxylamine oxidase / anammoxosome / oxidoreductase activity / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||
Biological species | Kuenenia stuttgartiensis (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SAD / Resolution: 2.6 Å | ||||||
Authors | Dietl, A. / Maalcke, W. / Barends, T.R.M. | ||||||
Citation | Journal: Acta Crystallogr D Struct Biol / Year: 2019 Title: A 60-heme reductase complex from an anammox bacterium shows an extended electron transfer pathway. Authors: Dietl, A. / Maalcke, W.J. / Ferousi, C. / Jetten, M.S.M. / Kartal, B. / Barends, T.R.M. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6h5l.cif.gz | 172.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6h5l.ent.gz | 141.8 KB | Display | PDB format |
PDBx/mmJSON format | 6h5l.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6h5l_validation.pdf.gz | 3.7 MB | Display | wwPDB validaton report |
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Full document | 6h5l_full_validation.pdf.gz | 3.7 MB | Display | |
Data in XML | 6h5l_validation.xml.gz | 30.4 KB | Display | |
Data in CIF | 6h5l_validation.cif.gz | 41.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/h5/6h5l ftp://data.pdbj.org/pub/pdb/validation_reports/h5/6h5l | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 59818.305 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: HAO-like reductase / Source: (natural) Kuenenia stuttgartiensis (bacteria) References: UniProt: Q1PVE0, UniProt: A0A2C9CG41*PLUS, hydroxylamine oxidase | ||
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#2: Protein | Mass: 25438.662 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Kuenenia stuttgartiensis (bacteria) / References: UniProt: Q1PVE1 | ||
#3: Chemical | ChemComp-HEC / #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.91 Å3/Da / Density % sol: 57.69 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / Details: 1.5 M ammonium sulfate, 1% Tween-20 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU MICROMAX-007 HF / Wavelength: 1.5418 Å |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Jul 26, 2011 / Details: OSMIC MIRRORS |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.6→60 Å / Num. obs: 29078 / % possible obs: 94.4 % / Redundancy: 2.9 % / Rrim(I) all: 0.113 / Net I/σ(I): 10.6 |
Reflection shell | Resolution: 2.6→2.7 Å / Redundancy: 2.5 % / Mean I/σ(I) obs: 3.4 / Num. unique obs: 4707 / Rrim(I) all: 0.393 / % possible all: 84.5 |
-Processing
Software |
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Refinement | Method to determine structure: SAD / Resolution: 2.6→59.143 Å / SU ML: 0.33 / Cross valid method: FREE R-VALUE / σ(F): 1.99 / Phase error: 23.07
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.6→59.143 Å
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Refine LS restraints |
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LS refinement shell |
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