+Open data
-Basic information
Entry | Database: PDB / ID: 6evh | |||||||||
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Title | Lipoaminopeptide helioferin A and B from Mycogone rosea | |||||||||
Components | Lipoaminopeptide helioferin A and B | |||||||||
Keywords | ANTIBIOTIC / Lipoaminopeptide / protonophoric / peptaibol / peptaibiotic | |||||||||
Function / homology | FLUORIDE ION Function and homology information | |||||||||
Biological species | Mycogone rosea (fungus) | |||||||||
Method | X-RAY DIFFRACTION / AB INITIO PHASING / Resolution: 0.9 Å | |||||||||
Authors | Gessmann, R. / Petratos, K. | |||||||||
Citation | Journal: Acta Cryst. D / Year: 2018 Title: Aminolipopeptide helioferin A and B Authors: Gessmann, R. / Petratos, K. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6evh.cif.gz | 18 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6evh.ent.gz | 11.5 KB | Display | PDB format |
PDBx/mmJSON format | 6evh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6evh_validation.pdf.gz | 402.7 KB | Display | wwPDB validaton report |
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Full document | 6evh_full_validation.pdf.gz | 402.7 KB | Display | |
Data in XML | 6evh_validation.xml.gz | 2.6 KB | Display | |
Data in CIF | 6evh_validation.cif.gz | 2.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ev/6evh ftp://data.pdbj.org/pub/pdb/validation_reports/ev/6evh | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein/peptide | Mass: 1121.496 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: MOO is 2-methyl-N-1-oxooctanoic acid,AMO is AHMOD is (2S, 4S, 6S)-2-amino-6-hydroxy-4-methyl-8-oxodecanoyl,AIB is alpha-aminoisobutyric acid,C9K is APAE is conformation A 2-(2-aminopropyl) ...Details: MOO is 2-methyl-N-1-oxooctanoic acid,AMO is AHMOD is (2S, 4S, 6S)-2-amino-6-hydroxy-4-methyl-8-oxodecanoyl,AIB is alpha-aminoisobutyric acid,C9K is APAE is conformation A 2-(2-aminopropyl)aminoethanol and C9N, conformation B AMAE is 2-[(2-aminopropyl)-methylamino]-ethanol Source: (natural) Mycogone rosea (fungus) |
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#2: Chemical | ChemComp-CL / |
#3: Chemical | ChemComp-F / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 1.44 Å3/Da / Description: plate, 0.5 mm x 0.2 mm x 0.03 |
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Crystal grow | Temperature: 297 K / Method: evaporation / Details: slow evaporation in a closed vial |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SEALED TUBE / Type: BRUKER IMUS MICROFOCUS / Wavelength: 1.54178 Å |
Detector | Type: RDI CMOS_8M / Detector: CMOS / Date: Jun 7, 2017 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54178 Å / Relative weight: 1 |
Reflection | Resolution: 0.82→17.3 Å / Num. obs: 11314 / % possible obs: 91.5 % / Redundancy: 9.7 % / Net I/σ(I): 26.2 |
Reflection shell | Resolution: 0.9→1 Å |
-Processing
Software |
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Refinement | Method to determine structure: AB INITIO PHASING / Resolution: 0.9→17.3 Å / Cross valid method: FREE R-VALUE Details: The last amino alcohol residue is Apae in helioferin A and Amae in helioferin B. The deposited structure is neutral The presence of a proton at N2 of the last residue Apae/Amae is implicated.
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Displacement parameters | Biso mean: 8 Å2 | ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 0.9→17.3 Å /
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