登録情報 | データベース: PDB / ID: 6en3 |
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タイトル | Crystal structure of full length EndoS from Streptococcus pyogenes in complex with G2 oligosaccharide. |
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要素 | Endo-beta-N-acetylglucosaminidase F2,Multifunctional-autoprocessing repeats-in-toxin |
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キーワード | HYDROLASE / endoglycosidase/immunoglobulin/carbohydrate/endo-beta-N-acetylglucos aminidase |
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機能・相同性 | 機能・相同性情報
CoA-dependent peptidyl-lysine N6-palmitoyltransferase activity / 合成酵素; C-N結合を形成; 酸-D-アミノ酸リガーゼ(ペプチド合成) / host cell cytosol / ligase activity / hydrolase activity, hydrolyzing O-glycosyl compounds / 転移酵素; アシル基を移すもの; アミノアシル基以外のアシル基を移すもの / cysteine-type peptidase activity / actin filament organization / toxin activity / carbohydrate metabolic process ...CoA-dependent peptidyl-lysine N6-palmitoyltransferase activity / 合成酵素; C-N結合を形成; 酸-D-アミノ酸リガーゼ(ペプチド合成) / host cell cytosol / ligase activity / hydrolase activity, hydrolyzing O-glycosyl compounds / 転移酵素; アシル基を移すもの; アミノアシル基以外のアシル基を移すもの / cysteine-type peptidase activity / actin filament organization / toxin activity / carbohydrate metabolic process / 加水分解酵素; プロテアーゼ; ペプチド結合加水分解酵素; システインプロテアーゼ / lipid binding / host cell plasma membrane / proteolysis / extracellular region / ATP binding / metal ion binding / membrane類似検索 - 分子機能 : / Endo-beta-N-acetylglucosaminidase F2, Ig-like domain / Actin cross-linking domain / Actin cross-linking domain / Actin cross-linking (ACD) domain profile. / : / C-terminal repeat from RTX toxins / : / RtxA toxin / RtxA repeat ...: / Endo-beta-N-acetylglucosaminidase F2, Ig-like domain / Actin cross-linking domain / Actin cross-linking domain / Actin cross-linking (ACD) domain profile. / : / C-terminal repeat from RTX toxins / : / RtxA toxin / RtxA repeat / Dermonecrotic/RTX toxin, membrane localization domain / Membrane Localization Domain / CGT/MARTX, cysteine protease (CPD) domain / CGT/MARTX, cysteine protease (CPD) domain superfamily / Peptidase C80 family / CGT/MARTX cysteine protease (CPD) domain profile. / Serralysin-like metalloprotease, C-terminal / Glycosyl hydrolases family 18 (GH18) active site / Glycosyl hydrolases family 18 (GH18) active site signature. / alpha/beta hydrolase fold / Alpha/beta hydrolase fold-1 / Leucine-rich repeat domain superfamily / Glycosidases / Alpha/Beta hydrolase fold / Glycoside hydrolase superfamily / TIM Barrel / Alpha-Beta Barrel / Alpha Beta類似検索 - ドメイン・相同性 NICKEL (II) ION / Endo-beta-N-acetylglucosaminidase F2 / Multifunctional-autoprocessing repeats-in-toxin類似検索 - 構成要素 |
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生物種 | Streptococcus pyogenes (化膿レンサ球菌)
 Vibrio cholerae (コレラ菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.903 Å |
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データ登録者 | Trastoy, B. / Klontz, E.H. / Orwenyo, J. / Marina, A. / Wang, L.X. / Sundberg, E.J. / Guerin, M.E. |
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引用 | ジャーナル: Nat Commun / 年: 2018 タイトル: Structural basis for the recognition of complex-type N-glycans by Endoglycosidase S. 著者: Trastoy, B. / Klontz, E. / Orwenyo, J. / Marina, A. / Wang, L.X. / Sundberg, E.J. / Guerin, M.E. |
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履歴 | 登録 | 2017年10月4日 | 登録サイト: PDBE / 処理サイト: PDBE |
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改定 1.0 | 2018年6月13日 | Provider: repository / タイプ: Initial release |
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改定 2.0 | 2020年7月29日 | Group: Advisory / Atomic model ...Advisory / Atomic model / Data collection / Derived calculations / Structure summary カテゴリ: atom_site / atom_site_anisotrop ...atom_site / atom_site_anisotrop / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_struct_conn_angle / pdbx_validate_close_contact / struct_asym / struct_conn / struct_conn_type / struct_site / struct_site_gen Item: _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ..._atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _atom_site_anisotrop.id / _atom_site_anisotrop.pdbx_label_asym_id / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr2_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_validate_close_contact.auth_asym_id_1 / _pdbx_validate_close_contact.auth_asym_id_2 / _pdbx_validate_close_contact.auth_seq_id_1 / _pdbx_validate_close_contact.auth_seq_id_2 / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn_type.id 解説: Carbohydrate remediation / Provider: repository / タイプ: Remediation |
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改定 2.1 | 2024年1月17日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description / Structure summary カテゴリ: chem_comp / chem_comp_atom ...chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn Item: _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI ..._chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.pdbx_leaving_atom_flag |
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