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Open data
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Basic information
Entry | Database: PDB / ID: 6dze | ||||||
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Title | Solution structure of Rbfox2 RRM mimetic peptide CPfox7 | ||||||
![]() | CPfox7 | ||||||
![]() | RNA BINDING PROTEIN / peptidomimetics / peptide structure / RNA recognition | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Sun, Y.-T. / Varani, G. | ||||||
![]() | ![]() Title: A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b. Authors: Sun, Y.T. / Shortridge, M.D. / Varani, G. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 56.1 KB | Display | ![]() |
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PDB format | ![]() | 39.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 422.5 KB | Display | ![]() |
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Full document | ![]() | 505.1 KB | Display | |
Data in XML | ![]() | 11.7 KB | Display | |
Data in CIF | ![]() | 12.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 6dz9C ![]() 6dzaC ![]() 6dzbC ![]() 6dzcC C: citing same article ( |
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Similar structure data | |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2024.398 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution / Contents: 3.0 mg/mL CPfox7, 90% H2O/10% D2O / Label: sample_1 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 3.0 mg/mL / Component: CPfox7 / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 10 mM potassium phosphate, 10 mM potassium chloride mM Label: condition_1 / pH: 6.5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE III / Manufacturer: Bruker / Model: AVANCE III / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | |||||||||||||||
NMR representative | Selection criteria: lowest energy | |||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 10 |