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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 6c6d | ||||||
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タイトル | 20mer crystal structure of CC chemokine 5 (CCL5) | ||||||
![]() | C-C motif chemokine 5 | ||||||
![]() | CYTOKINE / chemokine / CCL / oligomer | ||||||
機能・相同性 | ![]() regulation of chronic inflammatory response / CCR4 chemokine receptor binding / chemokine receptor antagonist activity / activation of phospholipase D activity / positive regulation of cellular biosynthetic process / CCR1 chemokine receptor binding / positive regulation of natural killer cell chemotaxis / negative regulation of macrophage apoptotic process / chemokine receptor binding / positive regulation of cell-cell adhesion mediated by integrin ...regulation of chronic inflammatory response / CCR4 chemokine receptor binding / chemokine receptor antagonist activity / activation of phospholipase D activity / positive regulation of cellular biosynthetic process / CCR1 chemokine receptor binding / positive regulation of natural killer cell chemotaxis / negative regulation of macrophage apoptotic process / chemokine receptor binding / positive regulation of cell-cell adhesion mediated by integrin / positive regulation of activation of Janus kinase activity / receptor signaling protein tyrosine kinase activator activity / CCR5 chemokine receptor binding / positive regulation of T cell chemotaxis / positive regulation of homotypic cell-cell adhesion / negative regulation of G protein-coupled receptor signaling pathway / CCR chemokine receptor binding / lymphocyte chemotaxis / phosphatidylinositol phospholipase C activity / negative regulation of T cell apoptotic process / positive regulation of T cell apoptotic process / neutrophil activation / positive regulation of calcium ion transport / eosinophil chemotaxis / positive regulation of innate immune response / cellular response to fibroblast growth factor stimulus / chemokine-mediated signaling pathway / positive regulation of monocyte chemotaxis / Chemokine receptors bind chemokines / chemokine activity / dendritic cell chemotaxis / regulation of T cell activation / leukocyte cell-cell adhesion / negative regulation of viral genome replication / phospholipase activator activity / positive regulation of macrophage chemotaxis / positive regulation of smooth muscle cell migration / exocytosis / chemoattractant activity / macrophage chemotaxis / Interleukin-10 signaling / monocyte chemotaxis / regulation of insulin secretion / positive regulation of cell adhesion / negative regulation by host of viral transcription / positive regulation of T cell migration / positive regulation of translational initiation / positive regulation of viral genome replication / cellular response to interleukin-1 / positive regulation of T cell proliferation / positive regulation of phosphorylation / positive regulation of tyrosine phosphorylation of STAT protein / neutrophil chemotaxis / epithelial cell proliferation / positive regulation of epithelial cell proliferation / positive regulation of smooth muscle cell proliferation / positive regulation of receptor signaling pathway via JAK-STAT / response to virus / response to toxic substance / cellular response to virus / cellular response to type II interferon / intracellular calcium ion homeostasis / calcium ion transport / chemotaxis / : / cell-cell signaling / cellular response to tumor necrosis factor / G alpha (i) signalling events / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / positive regulation of ERK1 and ERK2 cascade / protein kinase activity / positive regulation of cell migration / inflammatory response / G protein-coupled receptor signaling pathway / protein homodimerization activity / extracellular space / extracellular region / identical protein binding / cytoplasm 類似検索 - 分子機能 | ||||||
生物種 | ![]() | ||||||
手法 | ![]() ![]() ![]() | ||||||
![]() | Liang, W.G. / Tang, W.J. | ||||||
資金援助 | ![]()
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![]() | ![]() タイトル: 20mer crystal structure of CC chemokine 5 (CCL5) 著者: Liang, W.G. / Tang, W.J. | ||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 255.4 KB | 表示 | ![]() |
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PDB形式 | ![]() | 213 KB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 578 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 610.9 KB | 表示 | |
XML形式データ | ![]() | 44.4 KB | 表示 | |
CIF形式データ | ![]() | 60.9 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
関連構造データ | ![]() 5l2uS S: 精密化の開始モデル |
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類似構造データ |
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リンク
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集合体
登録構造単位 | ![]()
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単位格子 |
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要素
#1: タンパク質 | 分子量: 7514.645 Da / 分子数: 20 / 断片: UNP Residues 27-91 / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() |
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-実験情報
-実験
実験 | 手法: ![]() |
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試料調製
結晶 | マシュー密度: 5.07 Å3/Da / 溶媒含有率: 75.73 % |
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結晶化 | 温度: 303.15 K / 手法: 蒸気拡散法, ハンギングドロップ法 / 詳細: 10% (v/v) 2-propanol, 0.1M HEPES pH 7.5, 0.2M NaCl |
-データ収集
回折 | 平均測定温度: 100 K |
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放射光源 | 由来: ![]() ![]() ![]() |
検出器 | タイプ: ADSC QUANTUM 315r / 検出器: CCD / 日付: 2016年4月23日 |
放射 | プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray |
放射波長 | 波長: 0.97918 Å / 相対比: 1 |
反射 | 解像度: 5.5→50 Å / Num. obs: 10103 / % possible obs: 97.6 % / 冗長度: 10.2 % / CC1/2: 1 / Rmerge(I) obs: 0.2 / Rpim(I) all: 0.066 / Rrim(I) all: 0.213 / Rsym value: 0.13 / Net I/σ(I): 10 |
反射 シェル | 解像度: 5.5→5.59 Å / 冗長度: 7.3 % / Rmerge(I) obs: 0.6 / Num. unique obs: 393 / CC1/2: 0.972 / Rpim(I) all: 0.22 / Rrim(I) all: 0.64 / Rsym value: 0.29 / Χ2: 0.547 / % possible all: 77.8 |
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解析
ソフトウェア |
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精密化 | 構造決定の手法: ![]() 開始モデル: 5L2U 解像度: 5.5→48.114 Å / SU ML: 0.85 / 交差検証法: FREE R-VALUE / σ(F): 1.33 / 位相誤差: 40.57
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溶媒の処理 | 減衰半径: 0.9 Å / VDWプローブ半径: 1.11 Å | ||||||||||||||||||||||||||||||||||||||||||
精密化ステップ | サイクル: LAST / 解像度: 5.5→48.114 Å
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拘束条件 |
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LS精密化 シェル |
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