- PDB-6azt: Asparaginyl endopeptidase 1 bound to AAN peptide, a tetrahedral i... -
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ID or keywords:
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Basic information
Entry
Database: PDB / ID: 6azt
Title
Asparaginyl endopeptidase 1 bound to AAN peptide, a tetrahedral intermediate
Components
ALA-ALA-ASN tetrahedral intermediate
Asparaginyl endopeptidase 1
Keywords
PLANT PROTEIN
Function / homology
Function and homology information
vacuolar protein processing / vacuole / proteolysis involved in protein catabolic process / membrane => GO:0016020 / cysteine-type endopeptidase activity Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 0.9537 Å / Relative weight: 1
Reflection
Resolution: 1.8→66.71 Å / Num. obs: 31205 / % possible obs: 93.8 % / Redundancy: 4.1 % / Net I/σ(I): 14.7
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Processing
Software
Name
Version
Classification
REFMAC
5.8.0158
refinement
iMOSFLM
datareduction
Aimless
datascaling
PHASER
phasing
Refinement
Resolution: 1.8→66.71 Å / Cor.coef. Fo:Fc: 0.969 / Cor.coef. Fo:Fc free: 0.952 / SU B: 2.101 / SU ML: 0.063 / Cross valid method: THROUGHOUT / ESU R: 0.095 / ESU R Free: 0.098 / Details: HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.189
1654
5 %
RANDOM
Rwork
0.152
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obs
0.154
31205
93.8 %
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Solvent computation
Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å