Entry | Database: PDB / ID: 5z8n |
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Title | Crystal structure of Arabidopsis thaliana EBS C-terminal deletion construct in complex with an H3K4me2 peptide |
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Components | - Chromatin remodeling protein EBS
- H3K4me2 peptide
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Keywords | GENE REGULATION / EBS / BAH / PHD / H3K4me2 / histone reader |
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Function / homology | Function and homology information
negative regulation of long-day photoperiodism, flowering / regulation of photoperiodism, flowering / seed germination / flower development / chromocenter / plastid / negative regulation of gene expression, epigenetic / molecular function inhibitor activity / methylated histone binding / post-embryonic development ...negative regulation of long-day photoperiodism, flowering / regulation of photoperiodism, flowering / seed germination / flower development / chromocenter / plastid / negative regulation of gene expression, epigenetic / molecular function inhibitor activity / methylated histone binding / post-embryonic development / structural constituent of chromatin / nucleosome / transcription cis-regulatory region binding / protein heterodimerization activity / chromatin binding / DNA binding / extracellular region / nucleus / metal ion binding / plasma membrane / cytosolSimilarity search - Function Bromo adjacent homology (BAH) domain superfamily / Bromo adjacent homology domain / Bromo adjacent homology (BAH) domain / BAH domain / BAH domain profile. / Zinc finger, PHD-type, conserved site / PHD-finger / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Zinc finger, PHD-finger ...Bromo adjacent homology (BAH) domain superfamily / Bromo adjacent homology domain / Bromo adjacent homology (BAH) domain / BAH domain / BAH domain profile. / Zinc finger, PHD-type, conserved site / PHD-finger / Zinc finger PHD-type signature. / Zinc finger PHD-type profile. / Zinc finger, PHD-finger / Histone H3 signature 1. / Zinc finger, PHD-type / PHD zinc finger / Histone H3 signature 2. / Histone H3 / Histone H3/CENP-A / Histone H2A/H2B/H3 / Core histone H2A/H2B/H3/H4 / Zinc finger, FYVE/PHD-type / Histone-fold / Zinc finger, RING/FYVE/PHD-typeSimilarity search - Domain/homology |
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Biological species | ![](img/tx_plant.gif) Arabidopsis thaliana (thale cress) |
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Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.1 Å |
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Authors | Yang, Z. / Du, J. |
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Funding support | China, 1items Organization | Grant number | Country |
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Ministry of Science and Technology (China) | 2016YFA0503200 | China |
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Citation | Journal: Nat. Genet. / Year: 2018 Title: EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis. Authors: Yang, Z. / Qian, S. / Scheid, R.N. / Lu, L. / Chen, X. / Liu, R. / Du, X. / Lv, X. / Boersma, M.D. / Scalf, M. / Smith, L.M. / Denu, J.M. / Du, J. / Zhong, X. |
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History | Deposition | Jan 31, 2018 | Deposition site: PDBJ / Processing site: PDBJ |
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Revision 1.0 | Jul 25, 2018 | Provider: repository / Type: Initial release |
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Revision 1.1 | Sep 19, 2018 | Group: Data collection / Database references / Category: citation / citation_author Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year |
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Revision 1.2 | Nov 22, 2023 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_conn / struct_conn_type Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id |
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