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- PDB-5z8b: Truncated N-acetylglucosaminyl transferase KfiA from E. coli K5 s... -
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Open data
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Basic information
Entry | Database: PDB / ID: 5z8b | ||||||
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Title | Truncated N-acetylglucosaminyl transferase KfiA from E. coli K5 strain apo form | ||||||
![]() | KfiA protein | ||||||
![]() | TRANSFERASE / Glycosyltransferase | ||||||
Function / homology | Nucleotide-diphospho-sugar transferases / KfiA protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Hori, H. / Kakuta, Y. | ||||||
![]() | ![]() Title: Crysta structure of N-acetylglucosaminyl transferase KfiA from E. coli K5 strain Authors: Hori, H. / Kakuta, Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 94.8 KB | Display | ![]() |
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PDB format | ![]() | 71.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 436.2 KB | Display | ![]() |
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Full document | ![]() | 438.8 KB | Display | |
Data in XML | ![]() | 16 KB | Display | |
Data in CIF | ![]() | 21.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 27774.979 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: KfiA, kfiA, A4T40_20310, A9X62_20115, APT94_25675, CCL28_04130, CT143_12180, CT144_09435, CUB98_02030, CUB99_17445, SM09_03227 Production host: ![]() References: UniProt: Q47332 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.81 Å3/Da / Density % sol: 31.88 % |
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Crystal grow | Temperature: 293.15 K / Method: vapor diffusion, sitting drop / Details: PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210r / Detector: CCD / Date: Oct 19, 2009 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.91→73.71 Å / Num. obs: 16958 / % possible obs: 99.5 % / Redundancy: 3.8 % / Net I/σ(I): 8.9 |
Reflection shell | Resolution: 2.91→3.08 Å |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 35.122 Å2
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Refinement step | Cycle: 1 / Resolution: 2.91→73.71 Å
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Refine LS restraints |
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