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- PDB-5z2l: Crystal structure of BdcA in complex with NADPH -

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Basic information

Entry
Database: PDB / ID: 5z2l
TitleCrystal structure of BdcA in complex with NADPH
ComponentsCyclic-di-GMP-binding biofilm dispersal mediator protein
KeywordsOXIDOREDUCTASE / short-chain dehydrogenase/reductase (SDR) / NADPH binding / biofilm dispersal
Function / homology
Function and homology information


cyclic-di-GMP binding / single-species biofilm formation / NADPH binding / oxidoreductase activity
Similarity search - Function
short chain dehydrogenase / Short-chain dehydrogenase/reductase, conserved site / Short-chain dehydrogenases/reductases family signature. / Short-chain dehydrogenase/reductase SDR / NAD(P)-binding Rossmann-like Domain / NAD(P)-binding domain superfamily / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta
Similarity search - Domain/homology
Chem-NDP / DI(HYDROXYETHYL)ETHER / Cyclic-di-GMP-binding biofilm dispersal mediator protein
Similarity search - Component
Biological speciesEscherichia coli (E. coli)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.7 Å
AuthorsYang, W.S. / Hou, Y.J. / Li, D.F. / Wang, D.C.
Funding support China, 2items
OrganizationGrant numberCountry
National Natural Science Foundation of China31700661 China
National Natural Science Foundation of China31270792 China
CitationJournal: Biochem. Biophys. Res. Commun. / Year: 2018
Title: A potential substrate binding pocket of BdcA plays a critical role in NADPH recognition and biofilm dispersal
Authors: Yang, W.S. / Hong, Y. / Zhang, Y. / Wang, D.C. / Li, D.F. / Hou, Y.J.
History
DepositionJan 3, 2018Deposition site: PDBJ / Processing site: PDBJ
Revision 1.0Mar 7, 2018Provider: repository / Type: Initial release
Revision 1.1Mar 21, 2018Group: Database references / Category: citation
Item: _citation.journal_volume / _citation.page_first / _citation.page_last
Revision 1.2Nov 22, 2023Group: Data collection / Database references / Refinement description
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Cyclic-di-GMP-binding biofilm dispersal mediator protein
D: Cyclic-di-GMP-binding biofilm dispersal mediator protein
B: Cyclic-di-GMP-binding biofilm dispersal mediator protein
C: Cyclic-di-GMP-binding biofilm dispersal mediator protein
E: Cyclic-di-GMP-binding biofilm dispersal mediator protein
J: Cyclic-di-GMP-binding biofilm dispersal mediator protein
H: Cyclic-di-GMP-binding biofilm dispersal mediator protein
K: Cyclic-di-GMP-binding biofilm dispersal mediator protein
I: Cyclic-di-GMP-binding biofilm dispersal mediator protein
F: Cyclic-di-GMP-binding biofilm dispersal mediator protein
G: Cyclic-di-GMP-binding biofilm dispersal mediator protein
L: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)318,29035
Polymers308,36712
Non-polymers9,92223
Water45,3262516
1
A: Cyclic-di-GMP-binding biofilm dispersal mediator protein
B: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)53,0686
Polymers51,3952
Non-polymers1,6734
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area5750 Å2
ΔGint-25 kcal/mol
Surface area19440 Å2
MethodPISA
2
D: Cyclic-di-GMP-binding biofilm dispersal mediator protein
C: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)53,1027
Polymers51,3952
Non-polymers1,7075
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area6390 Å2
ΔGint-23 kcal/mol
Surface area19340 Å2
MethodPISA
3
E: Cyclic-di-GMP-binding biofilm dispersal mediator protein
F: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)53,2347
Polymers51,3952
Non-polymers1,8395
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area6200 Å2
ΔGint-26 kcal/mol
Surface area18680 Å2
MethodPISA
4
J: Cyclic-di-GMP-binding biofilm dispersal mediator protein
I: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)52,9475
Polymers51,3952
Non-polymers1,5533
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area6140 Å2
ΔGint-19 kcal/mol
Surface area19790 Å2
MethodPISA
5
H: Cyclic-di-GMP-binding biofilm dispersal mediator protein
G: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)52,9475
Polymers51,3952
Non-polymers1,5533
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area6090 Å2
ΔGint-24 kcal/mol
Surface area19290 Å2
MethodPISA
6
K: Cyclic-di-GMP-binding biofilm dispersal mediator protein
L: Cyclic-di-GMP-binding biofilm dispersal mediator protein
hetero molecules


Theoretical massNumber of molelcules
Total (without water)52,9925
Polymers51,3952
Non-polymers1,5973
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area5810 Å2
ΔGint-25 kcal/mol
Surface area19790 Å2
MethodPISA
Unit cell
Length a, b, c (Å)65.833, 72.280, 172.324
Angle α, β, γ (deg.)99.22, 86.78, 107.70
Int Tables number1
Space group name H-MP1

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Components

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Protein , 1 types, 12 molecules ADBCEJHKIFGL

#1: Protein
Cyclic-di-GMP-binding biofilm dispersal mediator protein


Mass: 25697.281 Da / Num. of mol.: 12
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Escherichia coli (strain K12) (bacteria)
Strain: K12 / Gene: bdcA, yjgI, b4249, JW4207 / Plasmid: pET-22b / Production host: Escherichia coli BL21(DE3) (bacteria) / References: UniProt: P39333

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Non-polymers , 7 types, 2539 molecules

#2: Chemical ChemComp-PG0 / 2-(2-METHOXYETHOXY)ETHANOL / PEG 6000 / 2-(2-Methoxyethoxy)ethanol


Mass: 120.147 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C5H12O3 / Comment: inhibitor, precipitant*YM
#3: Chemical
ChemComp-NDP / NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE / Nicotinamide adenine dinucleotide phosphate


Mass: 745.421 Da / Num. of mol.: 12 / Source method: obtained synthetically / Formula: C21H30N7O17P3 / Feature type: SUBJECT OF INVESTIGATION
#4: Chemical
ChemComp-EDO / 1,2-ETHANEDIOL / ETHYLENE GLYCOL / Ethylene glycol


Mass: 62.068 Da / Num. of mol.: 6 / Source method: obtained synthetically / Formula: C2H6O2
#5: Chemical ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL / Glycerol


Mass: 92.094 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: C3H8O3
#6: Chemical ChemComp-PEG / DI(HYDROXYETHYL)ETHER / Diethylene glycol


Mass: 106.120 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C4H10O3
#7: Chemical ChemComp-PG4 / TETRAETHYLENE GLYCOL / Polyethylene glycol


Mass: 194.226 Da / Num. of mol.: 1 / Source method: obtained synthetically / Formula: C8H18O5 / Comment: precipitant*YM
#8: Water ChemComp-HOH / water / Water


Mass: 18.015 Da / Num. of mol.: 2516 / Source method: isolated from a natural source / Formula: H2O

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.57 Å3/Da / Density % sol: 50.81 %
Crystal growTemperature: 295 K / Method: vapor diffusion, sitting drop / pH: 9
Details: 0.1M Bis-Tris propane pH 9.0, 30%(w/v) Polyethylene glycol 6,000

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Data collection

DiffractionMean temperature: 93 K
Diffraction sourceSource: SYNCHROTRON / Site: SSRF / Beamline: BL19U1 / Wavelength: 0.97845 Å
DetectorType: DECTRIS PILATUS3 S 6M / Detector: PIXEL / Date: May 18, 2015
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97845 Å / Relative weight: 1
ReflectionResolution: 1.7→49.2 Å / Num. obs: 312158 / % possible obs: 95 % / Redundancy: 7.2 % / Biso Wilson estimate: 20.1 Å2 / CC1/2: 0.999 / Rmerge(I) obs: 0.067 / Net I/σ(I): 15.8
Reflection shellResolution: 1.7→1.73 Å / Redundancy: 7.3 % / Rmerge(I) obs: 0.477 / Mean I/σ(I) obs: 3.7 / Num. unique obs: 15390 / CC1/2: 0.911 / % possible all: 94.1

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Processing

Software
NameVersionClassification
PHENIX(1.11.1_2575: ???)refinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT
Starting model: 4pcv
Resolution: 1.7→43.725 Å / SU ML: 0.16 / Cross valid method: FREE R-VALUE / σ(F): 0.01 / Phase error: 18.71
RfactorNum. reflection% reflectionSelection details
Rfree0.1789 2008 0.66 %Random
Rwork0.1511 ---
obs0.1513 303524 92.34 %-
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å
Refinement stepCycle: LAST / Resolution: 1.7→43.725 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms21098 0 640 2516 24254
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00822604
X-RAY DIFFRACTIONf_angle_d1.09430624
X-RAY DIFFRACTIONf_dihedral_angle_d16.56813418
X-RAY DIFFRACTIONf_chiral_restr0.0643392
X-RAY DIFFRACTIONf_plane_restr0.0064002
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
1.7-1.74250.2251370.198820220X-RAY DIFFRACTION87
1.7425-1.78960.24731390.190520414X-RAY DIFFRACTION88
1.7896-1.84230.23681250.183220635X-RAY DIFFRACTION88
1.8423-1.90180.2251410.183520695X-RAY DIFFRACTION89
1.9018-1.96970.22221410.190321155X-RAY DIFFRACTION91
1.9697-2.04860.16661460.168421830X-RAY DIFFRACTION93
2.0486-2.14180.21751430.161121794X-RAY DIFFRACTION93
2.1418-2.25470.22621440.165821456X-RAY DIFFRACTION92
2.2547-2.3960.18171430.150922022X-RAY DIFFRACTION94
2.396-2.5810.18121490.150122333X-RAY DIFFRACTION96
2.581-2.84070.17731550.151921827X-RAY DIFFRACTION94
2.8407-3.25160.18381490.150622599X-RAY DIFFRACTION97
3.2516-4.09620.14581490.130622146X-RAY DIFFRACTION95
4.0962-43.73990.14871470.132922390X-RAY DIFFRACTION96
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.22690.6745-0.38132.4744-0.41592.58810.00190.32030.3084-0.5242-0.06290.4733-0.2449-0.24570.02890.50170.082-0.15640.40520.0830.3306-45.2968-136.8964-66.2678
22.2470.13390.68060.83220.18721.9773-0.08580.31140.3202-0.43250.03670.1579-0.3392-0.10960.04730.5880.0732-0.12460.42030.09840.2619-42.5516-138.0942-70.1301
31.58750.00730.88470.0084-0.02882.1505-0.11620.31810.4718-0.5062-0.05870.0287-0.55910.07290.23450.72660.0899-0.10910.42020.14910.3875-38.9578-129.6949-68.612
45.01860.4483-0.00113.4076-0.8472.9366-0.03740.81080.4011-0.45920.0093-0.3167-0.55340.54650.01040.4526-0.08540.01240.43120.09340.2314-19.0536-135.6097-61.4211
51.57840.20520.42651.4162-0.20731.5414-0.11330.0760.2256-0.2297-0.0240.0222-0.33870.01210.12220.38640.0329-0.07470.30670.07390.2564-34.8787-137.5259-54.7751
63.1851-0.7428-4.2350.9891.31975.77320.00390.28920.331-0.1527-0.07140.0927-0.3231-0.19120.08320.2720.0047-0.06190.22690.0420.2268-33.6914-137.754-49.2866
70.2731-0.03170.65171.5559-0.25911.59330.07050.38190.1071-0.4631-0.1493-0.0268-0.15610.06010.06350.31650.0322-0.04340.35650.05890.1732-34.5883-150.5189-62.7137
81.70610.8098-1.46772.23532.5897.1192-0.05660.1218-0.0938-0.01170.1026-0.25940.10310.3833-0.01370.1781-0.0207-0.03920.30530.04910.1822-29.1439-156.5554-56.6074
91.26630.16711.24681.1950.06231.35950.0680.172-0.2179-0.08-0.08060.37260.0895-0.2919-0.07260.1499-0.0138-0.0680.3582-0.04980.2865-5.728-129.317-37.892
101.57170.39751.0891.08050.8953.65620.1018-0.0599-0.14510.0497-0.04310.15130.2077-0.2628-0.03290.0843-0.0365-0.02390.20650.02160.1735-21.413-128.931-47.705
111.05271.08611.73671.66441.50963.40730.01990.17050.0352-0.14930.02470.0307-0.1845-0.113-0.05070.16290.0181-0.03650.28470.00360.2014-19.689-140.337-41.523
121.8109-0.4327-1.21621.23310.64279.04420.03270.2694-0.0318-0.139-0.04250.06160.1718-0.00580.00670.085-0.0065-0.03690.23060.01690.1433-17.974-141.957-49.148
130.59770.73580.77152.83591.57791.19870.0597-0.22370.17640.0245-0.23580.4113-0.1156-0.29420.18720.15580.0433-0.0340.3323-0.00810.2294-24.722-137.122-29.216
142.5074-0.6806-0.39371.95020.77374.0104-0.10320.04440.1717-0.0732-0.01290.145-0.3426-0.1030.1210.20540.0449-0.06520.27060.05370.1908-21.389-146.496-31.971
153.8617-0.84660.14061.36260.28822.10630.06420.11050.2646-0.05-0.0344-0.3087-0.42350.3978-0.04340.3009-0.1475-0.03140.27420.0070.3685-10.744-166.016-24.452
161.92660.214-0.00692.75670.05830.7752-0.10090.09770.436-0.1980.0804-0.3754-0.52710.4069-0.00130.4017-0.1868-0.01280.34440.03030.4332-17.134-172.501-22.518
175.9396-0.99092.27594.654-0.70693.6272-0.2945-0.06071.1112-0.1284-0.1027-0.0697-0.7616-0.25780.37470.43710.0059-0.07580.2353-0.0120.4043-27.649-174.577-41.645
184.1243-0.89440.44042.13540.02871.4829-0.13930.24390.0209-0.12140.0582-0.0478-0.20510.06720.08650.2684-0.08090.00040.22410.04230.2407-24.865-161.505-31.099
192.8155-2.64940.07443.67391.39962.20150.12590.3120.3718-0.2972-0.0522-0.3194-0.31240.1811-0.08490.2429-0.06290.0010.22490.06320.2136-29.356-158.155-32.14
201.71360.4735-0.35481.2379-0.22211.85370.0712-0.01480.42510.053-0.0288-0.0135-0.38330.0401-0.06970.1773-0.0416-0.02660.14830.00660.2332-13.458-158.725-39.322
219.3898-0.6397-0.4818.5046-0.17468.115-0.158-0.425-0.41560.51960.14970.97630.468-1.1789-0.03530.318-0.01770.00250.34760.0160.3147-13.785-154.604-57.35
221.3695-0.69-0.13321.903-0.07672.11120.0494-0.03260.03720.06-0.0084-0.164-0.04250.1961-0.04350.0836-0.0163-0.04380.1848-0.00070.1528-55.382-165.366-50.095
237.86663.09192.97973.70431.23613.75980.1967-0.0206-0.4096-0.0350.0196-0.21850.3640.2292-0.21490.19520.0212-0.04960.16060.01520.1475-59.018-170.966-42.22
241.79430.15120.65782.25341.63333.3470.12960.0661-0.18620.1068-0.01720.00960.28540.0181-0.11790.0936-0.0159-0.03930.15970.01970.1465-42.121-170.389-40.062
251.20970.36811.96840.72080.5484.93990.04410.23860.0834-0.10720.0224-0.0638-0.10360.1228-0.06930.1199-0.0069-0.00810.24210.02060.1773-39.883-158.474-44.64
262.2995-1.1521-0.8686.18095.23276.31190.0050.03790.16920.12960.05690.00550.0623-0.0214-0.05840.0606-0.0083-0.02030.14220.02910.1304-34.133-163.555-46.922
270.46910.060.17410.5592-0.54082.51850.10550.2981-0.0503-0.2234-0.0926-0.070.10940.2788-0.01190.1255-0.004-0.01330.2914-0.01170.2004-48.539-149.572-38.898
281.1304-0.00210.00521.7558-0.00680.92640.03560.29790.1573-0.2573-0.0304-0.1258-0.07760.0796-0.0080.1202-0.0283-0.00320.22490.0280.1745-43.597-150.447-48.982
295.38170.9019-0.5320.28050.50442.9358-0.0585-0.2038-0.4632-0.4667-0.1496-0.09690.5607-0.08350.20810.45890.0675-0.01110.22060.00040.31414.496-144.6695-123.8644
301.73891.0477-1.04222.67920.30562.0319-0.0838-0.0408-0.1406-0.4366-0.0852-0.11380.39130.04180.18540.44440.11860.03040.21150.01760.26239.4263-144.2715-124.7534
311.78480.0383-0.37182.66470.761.56840.23770.2633-0.2168-1.0521-0.276-0.3880.27120.22070.05120.57460.11280.06330.26770.01610.285613.0616-141.7382-132.9235
322.9152.30870.13884.4266-0.22850.55290.01310.1415-0.1212-0.28450.0336-0.00510.1205-0.0092-0.05390.39410.10780.01290.2442-0.00770.19284.8587-127.51-127.6683
333.57353.78760.85355.79841.34430.7895-0.0387-0.4492-0.00930.0711-0.13180.1282-0.1105-0.14540.17130.41780.0859-0.00970.2870.03650.25575.2558-129.5884-114.7228
343.69792.0415-0.36962.1062-0.10980.9415-0.0697-0.1374-0.13720.1030.09290.22660.0775-0.1811-0.01320.37760.09050.04110.26060.05020.2631-2.1344-126.747-116.84
352.19480.25750.04471.8411-0.07831.0330.0021-0.0745-0.14060.15440.0325-0.2220.07080.1643-0.03830.37090.0861-0.00550.28660.0280.239712.7923-135.6284-111.1117
368.52815.39021.51566.33241.16410.29290.336-0.62360.13580.3759-0.2769-0.44510.0205-0.0888-0.09560.44210.08690.01130.36180.03050.283413.9971-128.8019-103.7166
370.318-0.6796-0.13251.7153-0.32542.5950.0222-0.1268-0.1129-0.0367-0.0908-0.08950.08760.31680.06430.14250.04620.04590.1535-0.00880.29171.406-94.256-117.138
380.9311.6171-0.27593.7911-0.49311.3597-0.1392-0.0417-0.3595-0.0785-0.0092-0.24610.17780.16290.13550.14970.04290.05880.1311-0.02520.2755-3.258-94.313-118.718
390.7898-0.7646-0.94952.31761.07061.7698-0.1961-0.0303-0.4108-0.2423-0.0234-0.22940.48840.17550.13410.28340.04420.08410.1821-0.03490.4753-5.894-94.749-127.615
401.3064-0.3714-1.01512.6578-0.68542.8741-0.1158-0.2169-0.41320.1078-0.0975-0.41580.31060.49880.2020.16410.054-0.00440.21160.02110.33248.384-100.211-125.247
412.7618-0.2739-2.19291.0614-0.50742.2522-0.27660.3781-0.579-0.03020.03830.04120.2936-0.34620.21440.2031-0.03090.04420.1786-0.07560.2902-10.521-119.163-124.706
421.0771.23580.49395.32460.54811.5234-0.0297-0.0509-0.50620.1585-0.08870.06860.37140.02560.09060.19590.0250.05730.11270.00740.2935-2.963-116.457-127.841
433.39712.5016-1.25262.3127-0.26622.069-0.0641-0.3402-0.37410.1521-0.0098-0.34610.07020.23780.06360.1790.05830.0040.19170.03330.252311.118-106.601-123.133
447.2857-0.11120.97250.3458-0.06450.9951-0.035-0.10390.04170.0125-0.01830.04950.0667-0.06860.05580.16820.01620.02560.1124-0.00590.20090.321-111.044-112.517
451.98762.1046-0.22633.38320.9211.2330.0353-0.0371-0.21280.1310.0002-0.22740.08510.1285-0.0390.1180.0324-0.0040.08930.00530.16037.697-113.483-114.607
461.09450.4270.61751.73660.43792.6162-0.01860.1026-0.3468-0.0531-0.00220.07030.3478-0.0974-0.02560.1283-0.00210.02110.1293-0.05080.2541-8.594-107.551-112.681
472.86682.0071.81283.6057-0.70582.94180.04280.3504-0.4941-0.17540.00380.18190.3951-0.0602-0.07130.1662-0.04030.00850.1431-0.0850.2249-18.397-110.879-105.428
481.98820.20570.74072.45522.00024.2546-0.03740.107-0.1595-0.02770.0276-0.11510.08320.06750.00770.07280.00760.0040.07360.00230.15481.961-102.522-105.713
493.3437-1.18450.00096.1111-0.81376.7717-0.15990.57010.3825-0.60730.07750.972-0.4351-1.03830.02730.2508-0.0071-0.07430.3544-0.0140.3659-15.337-117.737-101.077
502.8004-0.4442-0.78972.5720.93593.408-0.3419-0.2617-0.53470.74340.29160.09170.5471-0.12910.04150.59190.05190.04250.33790.10730.33532.655-97.953-85.319
511.3525-0.7085-0.00830.73550.56650.91630.0084-0.3471-0.48770.36940.02720.29460.0248-0.2221-0.02930.91330.07420.14810.54330.2460.46215.502-100.308-75.666
520.90770.602-0.37790.5011-0.26431.59620.2536-0.2638-0.02290.6793-0.00720.2483-0.3742-0.3185-0.21510.93920.17390.07930.50080.13290.22571.253-115.481-80.173
534.7244-2.79741.3264.4607-1.54752.24750.0771-0.07340.21140.3460.07830.1538-0.1887-0.2993-0.14680.62230.14690.08970.42930.09080.23953.043-113.298-92.797
547.9843-0.7206-3.38110.97160.93371.86740.0834-0.4755-0.13550.49110.0996-0.0086-0.35840.0778-0.19250.67710.14250.00640.39410.05930.226-3.825-117.083-91.481
550.2684-0.10790.85592.1724-0.8972.9001-0.0137-0.3993-0.27230.4050.28160.63450.1198-0.5877-0.23610.4750.07020.11660.4340.14310.40113.331-107.191-95.008
564.4782-0.3842-0.12632.11880.55361.5505-0.1192-0.12130.02220.32240.13290.3333-0.1265-0.239-0.02330.45520.10820.06730.32520.08130.23825.068-109.397-101.381
572.5082-0.5153-0.44171.7425-0.20992.4854-0.00830.16350.0391-0.0581-0.0191-0.1426-0.03360.12980.03350.0601-0.03440.01460.1109-0.00630.12890.193-149.337-89.925
587.142-0.7331-2.00892.74950.24041.59390.02670.10960.40160.0295-0.0161-0.2347-0.23790.0968-0.00920.1624-0.03870.00070.12190.01930.1458-5.101-149.502-81.139
593.882-3.394-0.7846.39421.78372.45290.2090.42720.116-0.6373-0.1265-0.066-0.2977-0.0779-0.05910.1341-0.04790.00370.18950.01570.1298.351-142.188-81.63
601.9021-0.7683-0.87012.85561.9072.27250.1659-0.31640.4180.05740.0061-0.049-0.18860.1115-0.14350.1182-0.05330.01410.1413-0.04340.189-8.707-126.481-82.545
610.8863-0.2631-0.79670.5875-0.2151.88660.00140.022-0.0021-0.00020.00140.02260.03780.0394-0.00610.0655-0.032-0.00840.097-0.00670.12874.349-133.655-90.951
621.64620.49080.06534.43863.61144.973-0.02340.1246-0.1163-0.1170.0164-0.00750.0071-0.07950.0040.0476-0.0133-0.00030.0974-0.0070.11757.368-129.197-92.518
631.03380.41920.41670.73570.42262.3628-0.034-0.05030.04010.03840.0364-0.0347-0.0560.1683-0.00770.06320.0011-0.00510.0976-0.01210.1351-5.522-137.799-100.697
642.8565-0.5942-0.79694.25040.7932.6808-0.0014-0.7824-0.28460.9555-0.1291-0.41520.17240.53340.20290.3158-0.0288-0.10030.38490.04870.2864-14.378-127.503-108.474
653.17950.2449-0.06121.55740.18770.6673-0.0779-0.199-0.10490.2206-0.00130.0256-0.0495-0.03080.08120.26310.02460.04240.17530.03680.1555-33.5813-127.818532.1445
663.8367-2.47353.1532.0151-1.63453.03270.0937-0.1823-0.45960.12410.00430.13660.14210.0633-0.11450.30510.03160.06590.21430.0450.2572-31.3324-133.59135.0663
674.3363-0.8829-1.56191.8106-1.53584.7983-0.3745-0.668-0.40790.45360.1529-0.02220.12240.25660.17980.30530.03990.02140.23490.07940.2229-26.9059-135.034639.6477
683.94120.3837-0.19971.00550.0181.204-0.0525-0.2153-0.33650.2204-0.01780.00160.19380.01230.06590.24320.03830.03920.15070.03630.1608-19.4129-135.009226.3653
696.68942.15630.88711.44850.61071.171-0.0165-0.2677-0.59530.1992-0.0034-0.0240.21380.0417-0.03510.22940.03970.0590.11060.03780.2338-18.3402-137.0422.0212
707.73943.0408-1.60292.4437-0.91030.4679-0.21750.0821-0.0137-0.05080.14620.0150.05220.01520.07310.15070.01080.02230.1059-0.00760.1066-21.673-124.015519.7766
717.64490.47624.15830.33220.64673.8896-0.02670.0014-0.27080.0353-0.00660.02740.0979-0.11390.05510.13260.00260.03970.0824-0.00790.1511-22.4956-129.496313.9332
722.06011.5623-0.26513.45750.07010.14490.0262-0.2496-0.00950.4167-0.0171-0.1206-0.02750.1752-0.01370.18920.0323-0.00720.1663-0.0020.1234-18.6721-114.864929.3857
731.6973-0.2879-0.15731.3522-0.07021.8651-0.0256-0.10460.09240.15290.0049-0.0322-0.10350.099-0.00380.13240.01460.01380.08640.00550.1075-26.2743-114.723921.2454
742.1979-0.5634-0.64073.4050.44850.7707-0.0015-0.06170.27830.15380.08830.1902-0.3609-0.1174-0.04290.46620.1260.04810.2490.0320.25125.344-138.498-0.169
752.08850.66330.2152.9195-0.3920.8562-0.0125-0.0774-0.04360.08330.04980.2565-0.061-0.0445-0.03850.39120.13390.05230.23180.0210.1842-5.925-134.6411.03
767.23535.1013.65265.25782.59652.9473-0.0172-0.0740.02340.43990.1105-0.0965-0.08750.1305-0.10630.42890.11940.01430.24670.00720.1788-6.913-125.13413.951
771.057-0.5114-0.52711.6187-0.39411.0956-0.0535-0.1126-0.00150.49790.19960.4084-0.2749-0.2602-0.13070.61770.20410.12210.38170.06630.2854-8.659-127.246-4.028
781.60220.33791.87242.84081.47192.59920.1819-0.5167-0.07560.6146-0.05360.6312-0.0396-0.3562-0.10740.74090.22340.21250.42340.10880.3425-21.096-121.251-5.743
790.14110.0175-0.10580.120.13220.241-0.0091-0.19320.12880.20550.0320.0879-0.266-0.03770.06661.54630.2963-0.06150.4669-0.25290.07610.158-101.466-11.191
800.0608-0.08090.12890.1214-0.19210.3887-0.2288-0.35250.15070.3489-0.06790.0408-0.1685-0.1438-0.14861.60130.37040.10460.7163-0.11650.163-6.281-95.065-13.239
810.43290.19520.15050.2365-0.00670.89030.1948-0.2063-0.09420.4921-0.0624-0.0837-0.10760.00530.01331.30110.22430.11210.5070.08170.0643-15.138-100.368-0.103
823.52130.04550.06910.38480.03431.21260.329-0.11550.32890.336-0.07480.1645-0.5204-0.4008-0.25970.87880.2180.13990.45440.06740.2598-18.381-109.364-3.429
830.3978-0.1532-0.59991.40810.04151.0033-0.1054-0.28460.09980.79240.1258-0.3336-0.43850.1763-0.12390.9420.1474-0.06420.4505-0.02310.218-2.008-108.0563.949
841.5915-0.24130.62371.35170.07370.2676-0.15180.0598-0.18570.53390.0473-0.2793-0.20180.08820.05940.75030.1484-0.04160.40410.02440.2596-3.581-114.15118.467
852.08060.2174-0.23871.8452-0.66744.3257-0.006-0.0960.01490.13440.01010.2586-0.0426-0.1010.01140.0622-0.00090.02220.1171-0.01370.196-44.5827-101.954914.4155
867.48061.8421-3.0521.8123-1.02412.0648-0.06780.21910.3439-0.16280.08620.32220.0545-0.2626-0.02740.1149-0.0023-0.02330.1616-0.01320.223-48.0849-96.36346.4646
871.8002-0.5262-1.98990.92090.9683.85540.00510.1490.0635-0.0037-0.06430.1401-0.0501-0.18150.06090.05090.0081-0.02780.12120.00780.1654-33.3092-97.86123.8156
885.1293-0.2554-1.02982.30261.38017.18120.12520.47460.3024-0.21950.01430.1907-0.377-0.1386-0.11350.08810.006-0.02460.14350.02130.1758-29.3157-98.8928-4.2715
891.8262-1.0095-1.52511.87251.05853.1268-0.0202-0.0111-0.00550.12530.0360.0260.1217-0.0039-0.03060.0386-0.005-0.02070.09150.00690.1284-28.6091-103.37610.1992
902.14570.23151.57741.03110.76076.8436-0.0332-0.15720.00960.08020.0147-0.0309-0.157-0.10170.03930.06010-0.00340.0761-0.00240.133-23.1038-103.795211.3348
913.66860.9712.80693.13712.3815.1674-0.01290.3076-0.0599-0.1378-0.03590.24080.0025-0.06670.02350.0725-0.01430.01880.11910.01750.1315-36.8453-112.79615.2456
921.69740.3340.43632.18261.9232.0639-0.07250.1225-0.03670.0976-0.11020.30940.0975-0.17670.17980.099-0.02170.0250.09220.01460.1392-36.5968-117.638710.7652
932.79480.08780.70541.96291.55085.3406-0.13310.2707-0.2658-0.05980.08850.13140.32750.06160.04020.1216-0.02720.02430.1239-0.00630.1597-29.8704-122.61385.9035
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1chain 'A' and (resid 2 through 16 )
2X-RAY DIFFRACTION2chain 'A' and (resid 17 through 40 )
3X-RAY DIFFRACTION3chain 'A' and (resid 41 through 81 )
4X-RAY DIFFRACTION4chain 'A' and (resid 82 through 107 )
5X-RAY DIFFRACTION5chain 'A' and (resid 108 through 143 )
6X-RAY DIFFRACTION6chain 'A' and (resid 144 through 167 )
7X-RAY DIFFRACTION7chain 'A' and (resid 168 through 226 )
8X-RAY DIFFRACTION8chain 'A' and (resid 227 through 240 )
9X-RAY DIFFRACTION9chain 'B' and (resid 2 through 81 )
10X-RAY DIFFRACTION10chain 'B' and (resid 82 through 120 )
11X-RAY DIFFRACTION11chain 'B' and (resid 121 through 143 )
12X-RAY DIFFRACTION12chain 'B' and (resid 144 through 167 )
13X-RAY DIFFRACTION13chain 'B' and (resid 168 through 205 )
14X-RAY DIFFRACTION14chain 'B' and (resid 206 through 244 )
15X-RAY DIFFRACTION15chain 'C' and (resid 2 through 40 )
16X-RAY DIFFRACTION16chain 'C' and (resid 41 through 81 )
17X-RAY DIFFRACTION17chain 'C' and (resid 82 through 107 )
18X-RAY DIFFRACTION18chain 'C' and (resid 108 through 143 )
19X-RAY DIFFRACTION19chain 'C' and (resid 144 through 167 )
20X-RAY DIFFRACTION20chain 'C' and (resid 168 through 231 )
21X-RAY DIFFRACTION21chain 'C' and (resid 232 through 242 )
22X-RAY DIFFRACTION22chain 'D' and (resid 2 through 40 )
23X-RAY DIFFRACTION23chain 'D' and (resid 41 through 62 )
24X-RAY DIFFRACTION24chain 'D' and (resid 63 through 120 )
25X-RAY DIFFRACTION25chain 'D' and (resid 121 through 143 )
26X-RAY DIFFRACTION26chain 'D' and (resid 144 through 167 )
27X-RAY DIFFRACTION27chain 'D' and (resid 168 through 205 )
28X-RAY DIFFRACTION28chain 'D' and (resid 206 through 241 )
29X-RAY DIFFRACTION29chain 'E' and (resid 2 through 16 )
30X-RAY DIFFRACTION30chain 'E' and (resid 17 through 40 )
31X-RAY DIFFRACTION31chain 'E' and (resid 41 through 62 )
32X-RAY DIFFRACTION32chain 'E' and (resid 63 through 120 )
33X-RAY DIFFRACTION33chain 'E' and (resid 121 through 143 )
34X-RAY DIFFRACTION34chain 'E' and (resid 144 through 167 )
35X-RAY DIFFRACTION35chain 'E' and (resid 168 through 226 )
36X-RAY DIFFRACTION36chain 'E' and (resid 227 through 240 )
37X-RAY DIFFRACTION37chain 'F' and (resid 2 through 16 )
38X-RAY DIFFRACTION38chain 'F' and (resid 17 through 40 )
39X-RAY DIFFRACTION39chain 'F' and (resid 41 through 62 )
40X-RAY DIFFRACTION40chain 'F' and (resid 63 through 81 )
41X-RAY DIFFRACTION41chain 'F' and (resid 82 through 95 )
42X-RAY DIFFRACTION42chain 'F' and (resid 96 through 107 )
43X-RAY DIFFRACTION43chain 'F' and (resid 108 through 120 )
44X-RAY DIFFRACTION44chain 'F' and (resid 121 through 143 )
45X-RAY DIFFRACTION45chain 'F' and (resid 144 through 167 )
46X-RAY DIFFRACTION46chain 'F' and (resid 168 through 190 )
47X-RAY DIFFRACTION47chain 'F' and (resid 191 through 205 )
48X-RAY DIFFRACTION48chain 'F' and (resid 206 through 231 )
49X-RAY DIFFRACTION49chain 'F' and (resid 232 through 240 )
50X-RAY DIFFRACTION50chain 'G' and (resid 2 through 28 )
51X-RAY DIFFRACTION51chain 'G' and (resid 29 through 62 )
52X-RAY DIFFRACTION52chain 'G' and (resid 63 through 120 )
53X-RAY DIFFRACTION53chain 'G' and (resid 121 through 143 )
54X-RAY DIFFRACTION54chain 'G' and (resid 144 through 167 )
55X-RAY DIFFRACTION55chain 'G' and (resid 168 through 216 )
56X-RAY DIFFRACTION56chain 'G' and (resid 217 through 240 )
57X-RAY DIFFRACTION57chain 'H' and (resid 2 through 40 )
58X-RAY DIFFRACTION58chain 'H' and (resid 41 through 62 )
59X-RAY DIFFRACTION59chain 'H' and (resid 63 through 81 )
60X-RAY DIFFRACTION60chain 'H' and (resid 82 through 107 )
61X-RAY DIFFRACTION61chain 'H' and (resid 108 through 143 )
62X-RAY DIFFRACTION62chain 'H' and (resid 144 through 167 )
63X-RAY DIFFRACTION63chain 'H' and (resid 168 through 231 )
64X-RAY DIFFRACTION64chain 'H' and (resid 232 through 240 )
65X-RAY DIFFRACTION65chain 'I' and (resid 2 through 28 )
66X-RAY DIFFRACTION66chain 'I' and (resid 29 through 40 )
67X-RAY DIFFRACTION67chain 'I' and (resid 41 through 62 )
68X-RAY DIFFRACTION68chain 'I' and (resid 63 through 95 )
69X-RAY DIFFRACTION69chain 'I' and (resid 96 through 120 )
70X-RAY DIFFRACTION70chain 'I' and (resid 121 through 143 )
71X-RAY DIFFRACTION71chain 'I' and (resid 144 through 167 )
72X-RAY DIFFRACTION72chain 'I' and (resid 168 through 205 )
73X-RAY DIFFRACTION73chain 'I' and (resid 206 through 242 )
74X-RAY DIFFRACTION74chain 'J' and (resid 2 through 62 )
75X-RAY DIFFRACTION75chain 'J' and (resid 63 through 143 )
76X-RAY DIFFRACTION76chain 'J' and (resid 144 through 167 )
77X-RAY DIFFRACTION77chain 'J' and (resid 168 through 226 )
78X-RAY DIFFRACTION78chain 'J' and (resid 227 through 243 )
79X-RAY DIFFRACTION79chain 'K' and (resid 2 through 40 )
80X-RAY DIFFRACTION80chain 'K' and (resid 41 through 81 )
81X-RAY DIFFRACTION81chain 'K' and (resid 82 through 143 )
82X-RAY DIFFRACTION82chain 'K' and (resid 144 through 167 )
83X-RAY DIFFRACTION83chain 'K' and (resid 168 through 226 )
84X-RAY DIFFRACTION84chain 'K' and (resid 227 through 245 )
85X-RAY DIFFRACTION85chain 'L' and (resid 2 through 40 )
86X-RAY DIFFRACTION86chain 'L' and (resid 41 through 62 )
87X-RAY DIFFRACTION87chain 'L' and (resid 63 through 95 )
88X-RAY DIFFRACTION88chain 'L' and (resid 96 through 107 )
89X-RAY DIFFRACTION89chain 'L' and (resid 108 through 143 )
90X-RAY DIFFRACTION90chain 'L' and (resid 144 through 167 )
91X-RAY DIFFRACTION91chain 'L' and (resid 168 through 190 )
92X-RAY DIFFRACTION92chain 'L' and (resid 191 through 226 )
93X-RAY DIFFRACTION93chain 'L' and (resid 227 through 240 )

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