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Open data
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Basic information
Entry | Database: PDB / ID: 5y9w | ||||||
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Title | Crystal 1 for AtLURE1.2-AtPRK6LRR | ||||||
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![]() | TRANSFERASE / Cysteine-rich peptide / Leucine-rich repeat receptor kinase / Receptor-ligand complex / Pollen tube guidance / PLANT PROTEIN | ||||||
Function / homology | ![]() pollen tube guidance / pollen tube tip / protein phosphorylation / protein serine/threonine kinase activity / extracellular region / ATP binding / identical protein binding / plasma membrane / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Chai, J. / Zhang, X. | ||||||
![]() | ![]() Title: Structural basis for receptor recognition of pollen tube attraction peptides. Authors: Zhang, X. / Liu, W. / Nagae, T.T. / Takeuchi, H. / Zhang, H. / Han, Z. / Higashiyama, T. / Chai, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 117 KB | Display | ![]() |
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PDB format | ![]() | 87.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 469 KB | Display | ![]() |
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Full document | ![]() | 476.8 KB | Display | |
Data in XML | ![]() | 23.4 KB | Display | |
Data in CIF | ![]() | 34.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 5yahC ![]() 4mn8S S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 26950.496 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Protein | | Mass: 8193.391 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #3: Chemical | ChemComp-SO4 / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 54.37 % |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 5.5 / Details: 0.2 M MgCl2, 0.1 M Bis-Tris pH 5.5, 25% PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 315 / Detector: CCD / Date: Oct 2, 2015 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 1.847→35.383 Å / Num. obs: 56086 / % possible obs: 98.2 % / Redundancy: 3.7 % / Net I/σ(I): 16.8 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 4MN8 Resolution: 1.847→35.383 Å / SU ML: 0.2 / Cross valid method: NONE / σ(F): 0 / Phase error: 22.86
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.847→35.383 Å
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Refine LS restraints |
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LS refinement shell |
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