+Open data
-Basic information
Entry | Database: PDB / ID: 5y0u | ||||||
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Title | The solution structure of AEBP2 C2H2 zinc fingers | ||||||
Components | Zinc finger protein AEBP2 | ||||||
Keywords | METAL BINDING PROTEIN / C2H2 / AEBP2 / PRC2 / zinc finger | ||||||
Function / homology | Function and homology information ESC/E(Z) complex / PRC2 methylates histones and DNA / transcription coregulator activity / PKMTs methylate histone lysines / chromatin organization / chromatin / regulation of transcription by RNA polymerase II / negative regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / metal ion binding Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / na | ||||||
Authors | Sun, A. / Shi, Y. / Wu, J. | ||||||
Citation | Journal: Protein Cell / Year: 2018 Title: Structural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4. Authors: Sun, A. / Li, F. / Liu, Z. / Jiang, Y. / Zhang, J. / Wu, J. / Shi, Y. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5y0u.cif.gz | 631.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5y0u.ent.gz | 529.8 KB | Display | PDB format |
PDBx/mmJSON format | 5y0u.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/y0/5y0u ftp://data.pdbj.org/pub/pdb/validation_reports/y0/5y0u | HTTPS FTP |
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-Related structure data
Related structure data | 5y1uC C: citing same article (ref.) |
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Similar structure data | |
Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 12188.656 Da / Num. of mol.: 1 / Fragment: UNP RESIDUES 258-357 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: AEBP2 / Plasmid: P28 Production host: Escherichia coli 'BL21-Gold(DE3)pLysS AG' (bacteria) Strain (production host): BL21-Gold(DE3)pLysS AG / References: UniProt: Q6ZN18 |
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#2: Chemical |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 100 mM / Label: conditions_1 / pH: 6.3 / Pressure: 101325 Pa / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker DMX / Manufacturer: Bruker / Model: DMX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: na / Software ordinal: 1 | ||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |