+Open data
-Basic information
Entry | Database: PDB / ID: 5xo3 | ||||||
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Title | Thanatin M21F Free | ||||||
Components | Thanatin | ||||||
Keywords | ANTIMICROBIAL PROTEIN / CYANA 2.1 | ||||||
Function / homology | defense response to fungus / killing of cells of another organism / defense response to bacterium / innate immune response / extracellular region / Thanatin Function and homology information | ||||||
Biological species | Podisus maculiventris (spined soldier bug) | ||||||
Method | SOLUTION NMR / na | ||||||
Authors | Sinha, S. / Bhattacharjya, S. | ||||||
Citation | Journal: To Be Published Title: Thanatin M21F Free Authors: Sinha, S. / Bhattacharjya, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 5xo3.cif.gz | 146.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb5xo3.ent.gz | 112.5 KB | Display | PDB format |
PDBx/mmJSON format | 5xo3.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 5xo3_validation.pdf.gz | 430.1 KB | Display | wwPDB validaton report |
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Full document | 5xo3_full_validation.pdf.gz | 662.5 KB | Display | |
Data in XML | 5xo3_validation.xml.gz | 24.4 KB | Display | |
Data in CIF | 5xo3_validation.cif.gz | 28.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/xo/5xo3 ftp://data.pdbj.org/pub/pdb/validation_reports/xo/5xo3 | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2457.962 Da / Num. of mol.: 1 / Mutation: M21F / Source method: obtained synthetically / Source: (synth.) Podisus maculiventris (spined soldier bug) / References: UniProt: P55788 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 300 uM Thanatin M21F, 90% H2O/10% D2O / Label: Thanatin M21F / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 300 uM / Component: Thanatin M21F / Isotopic labeling: natural abundance |
Sample conditions | Ionic strength: 0 mM / Label: conditions_1 / pH: 5 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: na / Software ordinal: 3 | ||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |